Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.2e-212 743.0 426 100.0
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 3.0e-89 333.2 403 49.6
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 4.7e-79 299.3 404 44.8
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 2.8e-63 246.9 386 40.2
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.5e-61 241.1 404 39.4
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.5e-61 241.1 401 39.9
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 2.0e-61 240.7 402 41.0
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.4e-61 240.0 403 39.0
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.4e-61 240.0 403 39.0
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 5.8e-61 239.2 409 38.9
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 1.7e-60 237.7 401 39.4
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.2e-60 237.3 404 38.1
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 2.9e-60 236.9 403 38.7
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 1.1e-59 235.0 397 38.8
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.4e-59 234.6 406 39.2
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 2.5e-59 233.8 401 39.2
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 4.2e-59 233.0 402 38.3
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 4.2e-59 233.0 404 39.4
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 5.5e-59 232.6 409 38.4
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 1.2e-58 231.5 409 37.4
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.6e-58 231.1 398 37.7
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.6e-58 231.1 399 39.1
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 2.1e-58 230.7 404 37.6
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 2.1e-58 230.7 404 37.6
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 2.7e-58 230.3 401 38.9
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 3.5e-58 229.9 401 38.4
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 3.5e-58 229.9 404 37.4
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 6.0e-58 229.2 405 36.5
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.8e-57 227.6 401 38.7
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 1.8e-57 227.6 399 37.6
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 3.0e-57 226.9 401 37.2
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 3.0e-57 226.9 402 38.6
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 6.7e-57 225.7 401 37.9
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 8.7e-57 225.3 405 37.3
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.1e-56 224.9 405 37.5
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.9e-56 224.2 397 37.5
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 2.5e-56 223.8 397 39.0
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 2.5e-56 223.8 402 37.6
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 2.5e-56 223.8 407 38.6
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.3e-56 223.4 399 38.1
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.3e-56 223.0 398 39.2
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 7.4e-56 222.2 403 36.7
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 9.6e-56 221.9 402 36.3
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 9.6e-56 221.9 400 37.5
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 9.6e-56 221.9 407 35.9
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 9.6e-56 221.9 398 37.4
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 2.1e-55 220.7 404 36.4
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 3.7e-55 219.9 406 37.7
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.2e-55 219.2 407 35.4
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 6.2e-55 219.2 411 35.8
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 8.2e-55 218.8 399 38.6
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 8.2e-55 218.8 403 35.7
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 8.2e-55 218.8 402 36.1
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 1.4e-54 218.0 400 37.0
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 2.4e-54 217.2 403 36.0
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 5.3e-54 216.1 408 36.5
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 5.3e-54 216.1 403 37.0
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 5.3e-54 216.1 389 36.8
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.2e-53 214.9 403 35.2
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 1.5e-53 214.5 389 36.2
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.6e-53 213.8 387 36.4
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 2.6e-53 213.8 387 36.7
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 5.8e-53 212.6 407 35.6
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 5.8e-53 212.6 387 36.7
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 7.6e-53 212.2 387 36.2
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 7.6e-53 212.2 387 36.2
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 7.6e-53 212.2 387 36.2
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 7.6e-53 212.2 404 36.1
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 1.7e-52 211.1 387 35.9
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 1.7e-52 211.1 387 35.7
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 1.7e-52 211.1 387 35.9
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 2.2e-52 210.7 399 36.6
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 3.8e-52 209.9 409 35.9
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 3.8e-52 209.9 401 34.9
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 4.9e-52 209.5 400 36.0
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.9e-52 209.5 404 34.9
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 4.9e-52 209.5 377 37.1
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 4.9e-52 209.5 413 35.6
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 8.4e-52 208.8 405 35.6
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.1e-51 208.4 387 35.9
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.9e-51 207.6 414 34.5
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 4.2e-51 206.5 402 35.8
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 5.5e-51 206.1 387 35.7
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 2.1e-50 204.1 403 36.5
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.7e-50 203.8 409 35.5
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 7.9e-50 202.2 402 35.6
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.0e-49 201.8 409 34.7
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 2.3e-49 200.7 407 35.6
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 3.9e-49 199.9 390 34.9
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.3e-48 196.8 398 34.2
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 4.8e-47 193.0 418 34.0
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.2e-45 188.3 411 34.1
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 3.4e-45 186.8 399 32.8
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 3.8e-44 183.3 396 32.8
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 8.5e-44 182.2 399 32.6
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 8.5e-44 182.2 399 32.6
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 1.1e-43 181.8 399 32.3
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 3.2e-43 180.3 399 32.1
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.2e-43 179.9 373 35.9
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.1e-42 177.6 399 31.8
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 4.6e-42 176.4 393 32.8
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.0e-41 175.3 396 31.6
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.0e-40 171.0 400 31.2
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 2.0e-40 171.0 402 31.1
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 7.4e-40 169.1 406 30.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 7.4e-40 169.1 406 30.8
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 9.7e-40 168.7 402 31.1
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.3e-39 168.3 414 31.6
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 2.8e-39 167.2 114 72.8
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 4.8e-39 166.4 397 31.5
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 4.8e-39 166.4 120 68.3
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 6.3e-39 166.0 360 33.9
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 8.2e-39 165.6 399 32.1
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 8.2e-39 165.6 399 31.1
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 8.2e-39 165.6 399 31.1
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 3.1e-38 163.7 402 30.3
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 3.1e-38 163.7 402 30.6
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.1e-38 163.3 361 33.5
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 5.3e-38 162.9 402 30.1
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 1.2e-37 161.8 119 68.1
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.5e-37 161.4 403 30.0
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 2.0e-37 161.0 357 32.2
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 2.6e-37 160.6 398 31.9
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 3.4e-37 160.2 357 32.2
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 5.9e-37 159.5 373 30.6
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 5.0e-36 156.4 359 32.6
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 5.0e-36 156.4 399 31.1
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 2.1e-34 151.0 401 29.2
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.7e-34 150.6 374 29.7
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-33 148.3 410 28.3
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-33 147.9 410 28.3
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.0e-33 147.1 381 31.8
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 2.0e-32 144.4 393 30.0
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-32 143.3 117 57.3
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-32 143.3 117 57.3
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 7.4e-32 142.5 388 29.6
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 3.7e-31 140.2 390 29.0
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.5e-27 128.3 121 51.2
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 9.4e-27 125.6 331 30.5
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 9.4e-27 125.6 109 57.8
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 6.1e-26 122.9 114 52.6
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 8.0e-26 122.5 106 55.7
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.1e-24 118.6 372 26.3
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 2.8e-23 114.0 110 51.8
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.1e-22 112.1 96 61.5
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 9.1e-22 109.0 74 74.3
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.2e-21 108.6 109 50.5
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.3e-20 105.1 74 74.3
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.5e-19 101.7 109 47.7
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.2e-18 98.6 109 46.8
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 2.1e-18 97.8 81 61.7
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 8.0e-18 95.9 65 70.8
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.2e-16 92.0 99 46.5
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.4e-16 90.5 82 54.9
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 1.3e-15 88.6 65 63.1
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-14 84.7 68 63.2
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 1.6e-13 81.6 94 43.6
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 4.5e-13 80.1 61 59.0
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 4.5e-13 80.1 58 69.0
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 5.0e-12 76.6 60 56.7
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.8e-09 68.2 102 35.3
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 1.2e-08 65.5 50 72.0
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 3.4e-08 63.9 52 67.3
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 4.4e-08 63.5 102 33.3
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 5.7e-08 63.2 45 62.2
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 4.1e-06 57.0 62 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 9.1e-06 55.8 102 38.2


User provided reference genes

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