Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 1.0e-54 216.5 106 100.0
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 3.9e-22 108.2 73 72.6
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 2.8e-20 102.1 66 75.8
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 6.4e-17 90.9 63 73.0
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 9.5e-13 77.0 61 59.0
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 8.1e-12 73.9 61 59.0
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 1.1e-11 73.6 61 57.4
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.8e-11 72.8 61 59.0
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 1.8e-11 72.8 75 49.3
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 3.1e-11 72.0 61 57.4
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 4.0e-11 71.6 64 54.7
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 5.2e-11 71.2 64 57.8
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 5.2e-11 71.2 64 57.8
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 5.2e-11 71.2 65 56.9
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 6.8e-11 70.9 64 54.7
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 8.9e-11 70.5 65 55.4
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.2e-10 70.1 64 54.7
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 1.2e-10 70.1 64 53.1
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.2e-10 70.1 64 54.7
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.5e-10 69.7 70 52.9
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 1.5e-10 69.7 65 56.9
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 2.0e-10 69.3 72 51.4
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 2.6e-10 68.9 64 54.7
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 2.6e-10 68.9 64 54.7
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 2.6e-10 68.9 64 54.7
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 2.6e-10 68.9 61 54.1
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.4e-10 68.6 73 49.3
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 3.4e-10 68.6 64 54.7
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 3.4e-10 68.6 65 52.3
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 5.8e-10 67.8 64 53.1
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 5.8e-10 67.8 61 55.7
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 5.8e-10 67.8 61 55.7
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 5.8e-10 67.8 64 54.7
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 5.8e-10 67.8 61 55.7
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 5.8e-10 67.8 64 53.1
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 7.6e-10 67.4 64 53.1
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 7.6e-10 67.4 64 51.6
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 7.6e-10 67.4 65 52.3
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 9.9e-10 67.0 91 45.1
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 9.9e-10 67.0 62 56.5
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 9.9e-10 67.0 64 53.1
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 9.9e-10 67.0 64 53.1
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 9.9e-10 67.0 64 51.6
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 9.9e-10 67.0 63 52.4
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.3e-09 66.6 67 50.7
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 1.3e-09 66.6 64 53.1
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 1.3e-09 66.6 64 53.1
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.3e-09 66.6 65 56.9
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.7e-09 66.2 68 50.0
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.7e-09 66.2 66 50.0
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.7e-09 66.2 64 50.0
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 1.7e-09 66.2 64 50.0
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.7e-09 66.2 64 53.1
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 2.2e-09 65.9 66 51.5
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 2.2e-09 65.9 65 53.8
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 2.2e-09 65.9 65 53.8
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 2.2e-09 65.9 65 53.8
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 2.2e-09 65.9 65 53.8
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 2.2e-09 65.9 65 53.8
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.2e-09 65.9 67 50.7
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.2e-09 65.9 61 52.5
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 2.9e-09 65.5 64 51.6
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 2.9e-09 65.5 67 50.7
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 2.9e-09 65.5 64 51.6
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.9e-09 65.5 64 53.1
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 2.9e-09 65.5 75 46.7
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 3.8e-09 65.1 64 51.6
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 3.8e-09 65.1 65 52.3
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.8e-09 65.1 66 47.0
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 3.8e-09 65.1 66 51.5
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 3.8e-09 65.1 66 48.5
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 3.8e-09 65.1 64 50.0
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 3.8e-09 65.1 64 51.6
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 3.8e-09 65.1 64 51.6
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 3.8e-09 65.1 64 51.6
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.9e-09 64.7 68 50.0
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.4e-09 64.3 64 51.6
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 6.4e-09 64.3 59 54.2
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 8.4e-09 63.9 75 46.7
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 8.4e-09 63.9 75 45.3
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.1e-08 63.5 88 42.0
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.1e-08 63.5 64 50.0
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.1e-08 63.5 64 50.0
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.4e-08 63.2 66 48.5
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.4e-08 63.2 64 48.4
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.9e-08 62.8 65 49.2
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.9e-08 62.8 66 48.5
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.9e-08 62.8 64 48.4
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 2.4e-08 62.4 77 42.9
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 3.2e-08 62.0 64 51.6
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 3.2e-08 62.0 61 47.5
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 3.2e-08 62.0 72 44.4
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 4.1e-08 61.6 66 47.0
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 4.1e-08 61.6 77 45.5
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.1e-08 61.6 65 50.8
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 5.4e-08 61.2 65 53.8
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 5.4e-08 61.2 65 52.3
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 5.4e-08 61.2 66 47.0
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 5.4e-08 61.2 68 47.1
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 7.1e-08 60.8 77 45.5
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 7.1e-08 60.8 77 45.5
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 7.1e-08 60.8 77 45.5
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 7.1e-08 60.8 65 49.2
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 9.2e-08 60.5 77 45.5
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 9.2e-08 60.5 73 46.6
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 9.2e-08 60.5 103 36.9
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.2e-07 60.1 65 52.3
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.2e-07 60.1 77 45.5
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.6e-07 59.7 64 50.0
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-07 59.7 66 48.5
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-07 59.7 66 48.5
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-07 59.7 66 48.5
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-07 59.7 66 48.5
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-07 59.7 66 48.5
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-07 59.7 66 48.5
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.6e-07 59.7 65 52.3
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.6e-07 59.7 65 52.3
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.1e-07 59.3 72 41.7
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.1e-07 59.3 66 48.5
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.7e-07 58.9 65 52.3
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 2.7e-07 58.9 65 50.8
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 2.7e-07 58.9 66 48.5
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 3.5e-07 58.5 72 44.4
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.6e-07 58.2 77 45.5
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 4.6e-07 58.2 71 43.7
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 6.0e-07 57.8 77 44.2
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 6.0e-07 57.8 71 42.3
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 6.0e-07 57.8 47 57.4
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 7.8e-07 57.4 77 40.3
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.0e-06 57.0 62 46.8
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 1.0e-06 57.0 101 37.6
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 2.3e-06 55.8 64 46.9
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 2.3e-06 55.8 61 47.5
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.0e-06 55.5 66 47.0
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 5.1e-06 54.7 73 41.1
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.6e-06 54.3 71 42.3


User provided reference genes

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