Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 4.6e-36 154.1 80 100.0
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 2.2e-14 82.0 76 60.5
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 5.0e-14 80.9 75 62.7
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.2e-13 78.2 82 58.5
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 4.2e-13 77.8 75 60.0
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.2e-13 77.8 83 57.8
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 7.2e-13 77.0 81 58.0
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.6e-12 75.9 82 52.4
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.6e-12 75.9 53 69.8
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 1.6e-12 75.9 76 57.9
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 2.7e-12 75.1 53 69.8
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 6.1e-12 73.9 81 55.6
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 8.0e-12 73.6 81 55.6
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 8.0e-12 73.6 74 55.4
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.0e-11 73.2 53 66.0
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.4e-11 72.8 50 68.0
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.4e-11 72.8 50 68.0
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 1.8e-11 72.4 83 56.6
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.0e-11 71.6 73 53.4
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.0e-11 71.6 74 56.8
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 6.7e-11 70.5 46 73.9
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.1e-10 69.7 47 70.2
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 1.1e-10 69.7 78 47.4
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 2.0e-10 68.9 90 47.8
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 2.0e-10 68.9 52 67.3
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.6e-10 68.6 73 52.1
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 3.3e-10 68.2 58 56.9
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 4.4e-10 67.8 87 54.0
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 5.7e-10 67.4 54 59.3
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 5.7e-10 67.4 84 48.8
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 7.5e-10 67.0 54 64.8
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 7.5e-10 67.0 51 66.7
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 7.5e-10 67.0 76 52.6
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 7.5e-10 67.0 54 61.1
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 9.7e-10 66.6 77 54.5
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 1.3e-09 66.2 88 45.5
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 1.3e-09 66.2 74 54.1
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 1.3e-09 66.2 79 50.6
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.7e-09 65.9 54 63.0
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 2.2e-09 65.5 54 63.0
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 2.2e-09 65.5 54 63.0
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 3.7e-09 64.7 47 68.1
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 4.8e-09 64.3 61 54.1
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 8.2e-09 63.5 51 62.7
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 1.1e-08 63.2 55 61.8
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.1e-08 63.2 50 58.0
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 1.1e-08 63.2 87 51.7
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.4e-08 62.8 85 49.4
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 1.4e-08 62.8 50 60.0
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.1e-08 61.6 50 60.0
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 5.3e-08 60.8 42 69.0
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 5.3e-08 60.8 42 69.0
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 5.3e-08 60.8 42 69.0
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 5.3e-08 60.8 42 69.0
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 5.3e-08 60.8 42 69.0
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 7.0e-08 60.5 48 66.7
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 7.0e-08 60.5 46 63.0
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.2e-07 59.7 40 72.5
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.6e-07 59.3 79 48.1
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 1.6e-07 59.3 42 69.0
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.6e-07 59.3 66 51.5
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 2.0e-07 58.9 49 61.2
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 2.0e-07 58.9 46 65.2
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.7e-07 58.5 48 58.3
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.7e-07 58.5 48 58.3
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 2.7e-07 58.5 63 47.6
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.5e-07 58.2 49 57.1
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 3.5e-07 58.2 73 50.7
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 4.5e-07 57.8 54 57.4
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 4.5e-07 57.8 53 54.7
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 4.5e-07 57.8 85 43.5
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.5e-07 57.8 54 57.4
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.5e-07 57.8 49 57.1
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 4.5e-07 57.8 51 56.9
Sed0027058 Sechium edule HOM05D003086 ORTHO05D003347 4.5e-07 57.8 39 69.2
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 4.5e-07 57.8 74 45.9
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 4.5e-07 57.8 74 48.6
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 5.9e-07 57.4 46 60.9
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 5.9e-07 57.4 46 60.9
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 5.9e-07 57.4 68 45.6
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 5.9e-07 57.4 76 48.7
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 5.9e-07 57.4 51 52.9
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 7.7e-07 57.0 54 55.6
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 1.0e-06 56.6 52 48.1
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 1.0e-06 56.6 52 48.1
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 1.0e-06 56.6 52 48.1
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 1.0e-06 56.6 52 48.1
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 1.0e-06 56.6 52 48.1
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 1.0e-06 56.6 91 45.1
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.0e-06 56.6 47 57.4
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 1.0e-06 56.6 94 41.5
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.0e-06 56.6 45 62.2
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.0e-06 56.6 48 58.3
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.3e-06 56.2 50 50.0
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-06 55.8 42 66.7
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-06 55.8 42 66.7
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 1.7e-06 55.8 42 66.7
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 1.7e-06 55.8 42 66.7
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 1.7e-06 55.8 42 66.7
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 1.7e-06 55.8 42 66.7
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.7e-06 55.8 47 57.4
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.7e-06 55.8 43 65.1
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 2.2e-06 55.5 40 67.5
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 2.2e-06 55.5 40 67.5
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.2e-06 55.5 55 54.5
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 2.9e-06 55.1 43 62.8
Potri.003G143800 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.9e-06 55.1 61 55.7
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 3.8e-06 54.7 71 45.1
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.0e-06 54.3 43 58.1
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 5.0e-06 54.3 44 56.8
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 5.0e-06 54.3 55 54.5
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 6.5e-06 53.9 53 49.1
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 8.5e-06 53.5 52 50.0
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 8.5e-06 53.5 45 57.8
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 8.5e-06 53.5 79 41.8


User provided reference genes

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