Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 4.4e-180 634.8 392 100.0
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 9.5e-159 563.9 395 90.4
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 4.7e-158 561.6 394 87.1
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 6.8e-157 557.8 404 85.9
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.1e-154 550.4 391 88.7
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.9e-152 542.0 394 86.3
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 7.3e-151 537.7 390 80.5
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 9.5e-151 537.3 394 86.5
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 1.8e-149 533.1 390 86.4
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 4.0e-149 531.9 396 79.5
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 5.2e-149 531.6 390 80.8
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.2e-148 530.4 394 85.8
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 1.5e-148 530.0 393 79.4
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 4.4e-148 528.5 389 85.6
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.3e-147 526.9 396 78.8
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 2.2e-147 526.2 395 78.2
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 3.7e-147 525.4 393 84.2
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 6.4e-147 524.6 391 84.1
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.4e-146 523.5 396 78.8
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.9e-146 523.1 394 85.3
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 2.4e-146 522.7 398 85.2
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 4.1e-146 521.9 394 79.4
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 7.1e-146 521.2 385 80.3
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 9.2e-146 520.8 392 85.2
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 2.7e-145 519.2 396 78.3
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 2.7e-145 519.2 396 78.8
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 3.5e-145 518.8 392 83.2
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 4.6e-145 518.5 394 83.8
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 4.6e-145 518.5 396 78.8
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.0e-144 517.3 396 78.5
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 1.3e-144 516.9 398 78.1
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.7e-144 516.5 404 76.5
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 2.3e-144 516.2 381 86.6
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 2.3e-144 516.2 399 76.9
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 3.9e-144 515.4 404 80.7
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.1e-144 515.0 395 84.3
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-143 513.8 395 84.1
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.5e-143 513.5 396 84.1
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 1.9e-143 513.1 397 77.1
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 3.3e-143 512.3 394 83.8
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.3e-143 512.3 382 84.6
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 3.3e-143 512.3 387 83.7
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 3.3e-143 512.3 386 79.3
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 5.6e-143 511.5 396 77.3
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-142 509.6 395 82.3
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 2.1e-142 509.6 394 81.5
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.8e-142 509.2 391 84.1
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 6.2e-142 508.1 388 83.5
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 6.2e-142 508.1 384 84.1
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.2e-142 508.1 382 83.8
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.1e-141 507.3 407 74.7
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.4e-141 506.1 384 83.6
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.2e-141 505.0 395 81.8
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 6.8e-141 504.6 383 78.1
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.0e-140 503.1 395 84.3
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 3.8e-139 498.8 394 80.7
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 3.8e-139 498.8 436 65.4
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 8.4e-139 497.7 394 82.5
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.4e-138 496.9 394 82.5
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.4e-138 496.9 394 82.5
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.9e-138 496.5 390 68.7
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.4e-138 496.1 427 71.4
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 2.4e-138 496.1 394 80.7
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 5.4e-138 495.0 394 82.2
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 7.1e-138 494.6 383 77.3
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.6e-137 493.4 394 82.7
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-135 486.9 394 79.9
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.5e-135 486.1 385 76.1
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 2.5e-135 486.1 393 76.3
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 3.3e-135 485.7 395 73.7
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 3.3e-135 485.7 396 79.5
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 3.3e-135 485.7 395 79.0
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 4.3e-135 485.3 396 78.0
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 5.6e-135 485.0 395 77.7
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 5.6e-135 485.0 455 62.0
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 7.3e-135 484.6 430 76.5
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 9.6e-135 484.2 394 74.1
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.1e-134 483.0 380 76.3
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 2.8e-134 482.6 395 74.9
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 2.4e-133 479.6 396 79.0
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 4.0e-133 478.8 401 73.3
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 5.3e-133 478.4 395 78.2
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 5.3e-133 478.4 395 78.2
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.9e-133 478.0 393 80.2
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 1.5e-132 476.9 396 77.5
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 2.0e-132 476.5 396 78.3
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-132 476.5 393 80.2
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 9.9e-132 474.2 392 78.1
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.9e-131 472.6 392 77.8
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.9e-131 472.6 392 77.8
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.4e-130 470.3 395 77.7
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.9e-130 469.9 389 79.4
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 2.4e-130 469.5 366 77.6
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.2e-130 469.2 410 76.8
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 5.4e-130 468.4 394 73.9
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.0e-128 462.6 395 78.0
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 5.6e-127 458.4 395 78.5
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 5.6e-127 458.4 396 78.0
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 5.6e-127 458.4 364 69.0
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.3e-126 457.2 385 71.4
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.8e-126 456.1 384 74.0
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 4.8e-126 455.3 355 72.1
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 2.2e-123 446.4 390 76.9
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.1e-122 444.1 385 78.2
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 4.2e-122 442.2 391 69.3
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 2.3e-120 436.4 390 75.9
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 6.7e-120 434.9 463 68.3
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.5e-119 433.7 395 74.2
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 2.4e-117 426.4 394 76.6
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.3e-115 420.6 385 68.6
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.5e-114 416.4 391 66.8
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 8.7e-112 407.9 379 73.9
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 8.2e-110 401.4 384 72.1
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 9.3e-106 387.9 388 65.7
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 1.6e-105 387.1 363 66.9
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 9.7e-103 377.9 297 86.9
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 7.7e-100 368.2 439 52.6
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.9e-98 363.6 347 72.3
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 8.8e-96 354.8 391 62.9
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 2.6e-95 353.2 329 67.5
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 5.5e-90 335.5 344 72.4
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.0e-88 331.3 297 70.4
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 7.7e-84 315.1 599 44.4
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 8.5e-83 311.6 260 86.2
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 6.1e-81 305.4 277 57.8
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 7.5e-79 298.5 387 56.3
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.7e-78 296.2 285 62.1
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 4.5e-76 289.3 282 78.4
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 3.2e-74 283.1 240 65.8
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 3.6e-73 279.6 473 46.3
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.4e-61 241.1 374 40.6
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-53 214.9 150 68.7
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.6e-49 199.9 139 67.6
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-48 197.6 139 66.9
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.2e-48 196.1 139 66.9
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 1.2e-47 194.9 131 76.3
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 3.5e-44 183.3 180 58.3
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.0e-43 180.3 166 57.8
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-42 178.3 134 64.2
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.6e-42 176.0 134 62.7
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-35 154.5 128 60.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.3e-35 154.1 171 50.3
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 5.2e-32 142.9 95 80.0
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 7.8e-28 129.0 105 62.9
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.6e-25 120.2 71 78.9
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.4e-24 118.2 461 25.6
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 4.0e-24 116.7 89 65.2
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 1.3e-19 101.7 56 87.5
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 2.5e-18 97.4 208 34.6
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 9.0e-16 89.0 55 76.4
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.1e-11 73.2 71 64.8
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.5e-10 70.9 52 76.9
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 4.8e-09 66.6 68 55.9
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.2e-07 62.0 82 51.2
Lsat_1_v5_gn_9_31241 Lactuca sativa HOM05D000436 ORTHO05D000678 6.4e-06 56.2 35 68.6
VMungo1383G2282 Vigna mungo HOM05D004623 ORTHO05D005100 6.4e-06 56.2 67 53.7


User provided reference genes

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