Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 3.2e-180 635.2 375 100.0
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 1.1e-98 364.4 370 68.1
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 1.3e-96 357.5 365 65.2
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 4.9e-96 355.5 365 60.3
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 1.1e-92 344.4 370 63.0
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 3.1e-90 336.3 368 66.3
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 9.9e-89 331.3 368 62.5
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 3.8e-88 329.3 387 58.9
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 4.6e-86 322.4 369 61.2
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 9.6e-84 314.7 365 60.8
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 1.7e-80 303.9 361 57.1
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 2.2e-80 303.5 367 57.8
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 2.9e-80 303.1 365 59.5
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 2.5e-76 290.0 362 53.3
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 6.2e-75 285.4 369 55.3
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 4.0e-74 282.7 379 56.7
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 2.0e-73 280.4 374 52.7
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 5.8e-73 278.9 372 48.7
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 1.3e-72 277.7 376 55.3
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 4.2e-71 272.7 358 54.5
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 1.2e-70 271.2 343 56.3
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.2e-70 271.2 343 56.3
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.6e-70 270.8 351 55.3
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 7.9e-70 268.5 341 53.7
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.1e-68 264.6 343 55.4
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 1.3e-67 261.2 374 52.7
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 4.8e-67 259.2 380 51.6
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 1.5e-65 254.2 344 55.2
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 2.6e-65 253.4 337 49.3
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 6.5e-64 248.8 365 46.8
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 1.4e-63 247.7 354 53.7
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 3.2e-63 246.5 354 53.1
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 7.9e-62 241.9 367 47.1
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 7.4e-60 235.3 366 50.5
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 9.7e-60 235.0 360 50.0
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.3e-59 234.6 355 47.3
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 3.7e-59 233.0 362 44.8
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 5.3e-58 229.2 368 44.8
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 2.0e-57 227.3 363 44.9
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 1.3e-56 224.6 352 52.3
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 1.2e-54 218.0 328 54.6
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 2.1e-54 217.2 281 58.7
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 2.7e-54 216.9 338 44.7
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 1.0e-53 214.9 281 57.3
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 2.3e-53 213.8 385 47.8
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 3.0e-53 213.4 342 50.0
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 6.7e-53 212.2 278 59.0
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 2.2e-51 207.2 394 48.0
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 4.8e-51 206.1 326 51.2
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 1.8e-50 204.1 365 48.2
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 2.4e-50 203.8 372 46.2
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 4.1e-50 203.0 325 51.1
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 4.1e-50 203.0 355 49.6
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 5.3e-50 202.6 278 48.6
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 9.1e-50 201.8 357 48.5
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 1.9e-47 194.1 360 45.8
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 7.2e-47 192.2 366 48.1
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 2.7e-46 190.3 278 54.3
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 2.3e-45 187.2 278 54.0
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 5.2e-45 186.0 357 45.1
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 8.8e-45 185.3 279 53.4
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 2.2e-43 180.6 334 45.5
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 9.1e-42 175.3 333 44.7
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 4.7e-38 162.9 351 44.2
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 1.4e-37 161.4 359 40.7
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 1.4e-37 161.4 285 50.9
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 3.0e-37 160.2 377 41.6
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 1.2e-36 158.3 352 36.6
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 3.4e-36 156.8 278 41.0
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 7.5e-36 155.6 382 39.3
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 1.3e-35 154.8 356 43.5
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 2.2e-35 154.1 370 40.0
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 4.8e-35 152.9 371 41.2
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 4.1e-34 149.8 345 42.6
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 1.6e-33 147.9 331 36.6
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 7.7e-33 145.6 347 34.3
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 1.7e-32 144.4 361 40.4
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 1.5e-31 141.4 360 38.3
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 1.5e-31 141.4 360 38.3
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 1.5e-31 141.4 356 37.6
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 9.4e-31 138.7 359 37.9
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 9.4e-31 138.7 359 37.9
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 3.4e-28 130.2 366 36.3
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 2.9e-24 117.1 368 37.0
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 2.9e-24 117.1 360 36.1
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 7.2e-23 112.5 356 37.4
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 1.5e-20 104.8 208 37.0
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 4.4e-20 103.2 60 78.3
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 1.7e-19 101.3 331 31.1
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 4.1e-18 96.7 185 40.0
ClCG00G001110 Citrullus lanatus HOM05D007467 ORTHO05D009441 1.1e-15 88.6 143 58.7
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 1.5e-15 88.2 297 31.3
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 3.3e-15 87.0 341 32.6
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 7.3e-15 85.9 296 30.7
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 2.8e-14 84.0 247 33.6
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 5.8e-12 76.3 346 26.3
BcaB07g31547 Brassica carinata HOM05D007467 ORTHO05D009441 1.7e-11 74.7 143 38.5
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 8.3e-11 72.4 408 26.0
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 3.5e-09 67.0 56 55.4
Haze_06794 Corylus avellana HOM05D002166 ORTHO05D002634 7.8e-09 65.9 351 23.9
Cfa000231 Carpinus fangiana HOM05D002166 ORTHO05D002634 2.5e-07 60.8 378 23.0
ClCG01G022030 Citrullus lanatus HOM05D002166 ORTHO05D002634 5.6e-07 59.7 244 25.8
BcaB01g04716 Brassica carinata HOM05D002319 ORTHO05D002374 2.1e-06 57.8 148 40.5
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 2.1e-06 57.8 258 30.6
Ca_01644_v3 Cicer arietinum L. HOM05D002319 ORTHO05D002374 2.8e-06 57.4 153 35.3
MELO3C007386.2 Cucumis melo HOM05D002166 ORTHO05D002634 2.8e-06 57.4 240 25.4
Glyma.02G290700 Glycine max HOM05D002166 ORTHO05D002634 2.8e-06 57.4 129 41.1
Glyma.14G024000 Glycine max HOM05D002166 ORTHO05D002634 2.8e-06 57.4 129 51.9
Dinv40752 Davidia involucrata HOM05D002166 ORTHO05D002634 3.6e-06 57.0 115 40.0
Pp3c18_10070 Physcomitrium patens HOM05D002166 ORTHO05D002634 3.6e-06 57.0 178 46.1
CsaV3_6G049090 Cucumis sativus L. HOM05D002166 ORTHO05D002634 4.7e-06 56.6 236 25.4
BcaC01g06592 Brassica carinata HOM05D002319 ORTHO05D002374 6.2e-06 56.2 148 43.2
C03p12290 Brassica napus HOM05D002319 ORTHO05D002374 6.2e-06 56.2 148 43.2
BolC3t13702H Brassica oleracea HOM05D002319 ORTHO05D002374 6.2e-06 56.2 148 43.2
MBI02_g24810_MAGBIO Magnolia biondii HOM05D002166 ORTHO05D002634 6.2e-06 56.2 65 41.5
Psat2g011000 Pisum sativum HOM05D002166 ORTHO05D002634 6.2e-06 56.2 129 51.9
QL05p073305 Quercus lobata HOM05D002166 ORTHO05D002634 6.2e-06 56.2 57 43.9
RcHm_v2.0_Chr5g0039421 Rosa chinensis HOM05D002166 ORTHO05D002634 6.2e-06 56.2 127 44.9
Ca_06318_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 8.1e-06 55.8 127 52.8
Ca_30807_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 8.1e-06 55.8 127 52.8
Lj6g0008473 Lotus japonicus HOM05D002166 ORTHO05D002634 8.1e-06 55.8 129 52.7


User provided reference genes

Program Settings