Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 5.9e-228 793.9 410 100.0
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 5.4e-181 637.9 411 80.5
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 7.1e-181 637.5 412 80.3
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 2.8e-177 625.5 410 78.8
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 3.2e-173 612.1 410 75.6
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.6e-169 599.7 414 73.9
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.6e-169 599.7 414 74.2
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.6e-169 599.7 413 74.3
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.6e-169 598.6 414 73.9
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 8.1e-169 597.4 413 73.6
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 1.8e-168 596.3 411 73.5
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 4.0e-168 595.1 418 73.0
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 5.3e-168 594.7 411 72.3
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 1.2e-167 593.6 414 73.7
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-167 593.6 414 73.7
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.5e-167 593.2 410 74.9
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 3.8e-166 588.6 409 73.8
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.7e-164 582.4 414 73.9
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 7.9e-164 580.9 439 68.1
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.3e-163 580.1 381 77.7
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 1.1e-162 577.0 409 74.3
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.5e-162 576.6 413 72.4
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 2.5e-162 575.9 412 70.6
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 4.3e-162 575.1 413 73.4
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 7.4e-162 574.3 413 73.8
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 3.7e-161 572.0 413 72.6
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 3.7e-161 572.0 412 70.9
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.4e-160 570.1 413 72.6
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 1.8e-160 569.7 411 71.3
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 5.3e-160 568.2 406 70.4
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 5.3e-160 568.2 412 70.4
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 5.8e-159 564.7 413 72.6
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 7.6e-159 564.3 414 71.7
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 7.6e-159 564.3 414 70.0
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 2.2e-158 562.8 413 69.7
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 3.8e-158 562.0 408 71.1
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 6.5e-158 561.2 418 69.4
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 3.2e-157 558.9 409 70.9
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 3.2e-157 558.9 409 70.9
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 4.2e-157 558.5 387 74.7
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 1.6e-156 556.6 405 71.9
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 3.5e-156 555.4 413 70.7
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 6.0e-156 554.7 479 61.8
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.3e-155 553.5 410 69.8
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 2.3e-155 552.7 415 68.0
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 1.5e-154 550.1 409 68.7
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.5e-154 550.1 409 69.7
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 1.9e-154 549.7 410 68.8
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.3e-154 548.9 411 66.4
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.3e-153 547.0 413 70.5
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 1.6e-153 546.6 383 73.1
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 2.8e-153 545.8 410 68.0
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 5.3e-152 541.6 393 69.7
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.0e-151 539.7 411 65.9
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 5.8e-151 538.1 411 69.1
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 9.3e-149 530.8 412 69.4
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 2.7e-148 529.3 405 68.9
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 6.1e-148 528.1 414 65.5
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 1.0e-147 527.3 383 70.2
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 8.7e-147 524.2 410 65.6
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 5.7e-146 521.5 416 64.7
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.4e-144 516.9 418 65.6
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 4.5e-143 511.9 416 65.9
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 5.0e-142 508.4 416 67.5
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.1e-141 507.3 411 64.2
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.9e-141 506.5 352 73.3
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 3.2e-141 505.8 419 61.1
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 7.2e-141 504.6 410 64.9
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 3.0e-139 499.2 413 62.2
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 2.0e-138 496.5 349 73.6
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 9.7e-138 494.2 421 60.6
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 2.2e-137 493.0 413 61.7
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 2.4e-136 489.6 413 61.0
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 3.1e-136 489.2 396 62.6
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 3.4e-135 485.7 344 71.8
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 6.5e-134 481.5 386 62.7
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 8.5e-134 481.1 414 59.9
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 2.5e-133 479.6 418 59.6
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 4.7e-132 475.3 361 67.6
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 3.9e-131 472.2 423 60.0
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 3.3e-130 469.2 402 59.7
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 2.2e-129 466.5 368 67.7
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 4.1e-128 462.2 362 64.6
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 4.1e-128 462.2 348 69.5
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 4.1e-128 462.2 390 60.8
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 3.5e-127 459.1 344 68.0
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 7.2e-125 451.4 421 59.6
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 2.7e-124 449.5 421 58.7
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 8.0e-124 448.0 421 58.4
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.4e-123 447.2 421 58.4
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 2.3e-123 446.4 422 58.1
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 5.2e-123 445.3 349 65.0
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 5.2e-123 445.3 405 56.8
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 3.3e-122 442.6 421 57.5
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.3e-121 440.7 396 59.8
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 8.2e-121 438.0 420 56.4
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.3e-118 430.6 395 58.5
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.2e-117 425.6 300 74.0
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 7.2e-117 424.9 421 55.8
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.1e-116 423.3 428 51.4
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 5.2e-115 418.7 419 55.4
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 3.4e-114 416.0 354 62.7
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.7e-113 413.7 452 50.4
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.8e-112 410.2 465 49.2
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 5.4e-112 408.7 419 54.7
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 6.8e-91 338.6 266 65.0
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.3e-86 324.3 374 46.0
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 1.7e-86 323.9 445 41.1
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 3.3e-85 319.7 453 40.4
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 2.0e-82 310.5 223 70.0
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 9.2e-80 301.6 317 50.2
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.1e-79 300.4 352 51.1
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.3e-77 292.7 194 75.3
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 5.6e-77 292.4 198 75.3
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 6.0e-71 272.3 284 53.2
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 5.1e-70 269.2 188 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.1e-64 251.5 313 46.0
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 4.2e-64 249.6 156 78.8
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 8.4e-57 225.3 235 54.0
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 4.2e-48 196.4 133 74.4
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 5.5e-48 196.1 138 73.9
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 4.8e-44 183.0 401 31.7
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 5.8e-42 176.0 277 40.8
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.9e-40 171.0 123 72.4
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 2.1e-39 167.5 150 59.3
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 2.7e-39 167.2 323 33.4
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.0e-38 163.7 151 59.6
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 2.2e-33 147.5 166 50.6
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 3.8e-33 146.7 94 72.3
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 4.6e-31 139.8 315 30.2
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 2.5e-24 117.5 598 23.2
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 2.5e-24 117.5 78 73.1
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 3.4e-18 97.1 136 41.2
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.1e-13 82.0 67 64.2
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 2.6e-13 80.9 69 55.1
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 1.3e-09 68.6 112 40.2
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 1.5e-08 65.1 338 23.4
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.6e-07 61.6 81 43.2
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 2.3e-06 57.8 31 80.6


User provided reference genes

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