Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 0.0e+00 2232.6 1176 100.0
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 0.0e+00 1568.5 1142 72.7
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 0.0e+00 1461.8 1154 68.7
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1432.2 1123 68.7
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1399.8 1132 67.7
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1377.8 1140 65.4
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1374.0 1132 66.6
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1359.0 1133 64.9
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1356.7 1139 64.8
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1351.3 1132 65.6
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1348.6 1130 66.1
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 0.0e+00 1342.0 1128 64.5
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1328.5 1137 64.3
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1325.5 1137 63.8
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1323.1 1132 64.9
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1322.8 1136 63.5
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1317.8 1137 62.5
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1313.1 1148 63.0
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 1312.7 1145 63.2
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1308.9 1146 62.3
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 0.0e+00 1289.2 1133 63.1
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1279.2 1133 62.2
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 0.0e+00 1251.9 1123 63.0
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1241.9 1154 60.6
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 0.0e+00 1205.7 1135 58.8
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 0.0e+00 1199.9 1136 59.0
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1177.5 1144 58.2
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 0.0e+00 1159.4 1194 56.2
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 0.0e+00 1153.7 1168 56.1
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 0.0e+00 1152.9 759 80.6
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 0.0e+00 1149.8 1132 57.7
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 0.0e+00 1141.3 1231 54.4
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 0.0e+00 1135.6 1149 56.6
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 0.0e+00 1127.1 1133 55.8
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 0.0e+00 1125.5 1270 52.6
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1114.8 1148 54.4
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 0.0e+00 1112.8 1092 57.2
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1082.0 1148 53.6
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 0.0e+00 1075.5 1269 51.4
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 8.0e-312 1074.7 1125 55.0
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 8.0e-312 1073.9 1140 54.6
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 4.7e-310 1068.1 1137 52.9
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 1.8e-309 1066.2 1129 53.6
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 5.7e-308 1061.2 1139 53.4
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.2e-307 1059.3 1139 54.2
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 4.8e-307 1058.1 1130 53.1
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 4.8e-307 1058.1 1130 53.1
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 6.3e-307 1057.7 1137 53.2
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 1.4e-306 1056.6 1141 53.5
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 2.4e-306 1055.8 1161 52.8
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 7.7e-305 1050.8 1139 53.0
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 8.5e-304 1047.3 1142 52.9
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 2.3e-301 1039.3 1131 52.6
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 6.7e-301 1037.7 1135 52.4
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.5e-300 1036.6 1142 52.7
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 7.2e-295 1017.7 1138 51.7
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 2.1e-294 1016.1 1141 52.1
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 1.7e-291 1006.5 966 57.7
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 1.8e-285 986.5 1130 51.5
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.8e-285 986.5 1143 52.5
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 4.5e-281 971.8 1023 53.5
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 1.0e-280 970.7 1086 51.9
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 1.7e-280 969.9 1023 53.3
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 1.5e-276 956.8 1144 49.0
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 4.9e-275 951.8 1022 52.7
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 6.4e-275 951.4 1275 45.7
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 7.8e-273 944.5 1158 50.0
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 3.0e-272 942.6 1033 51.6
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 3.9e-272 942.2 1167 48.6
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 9.5e-271 937.6 829 62.2
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 4.0e-269 932.2 1075 51.3
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.8e-261 906.7 1025 50.9
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 2.0e-260 903.3 1138 48.9
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 7.3e-255 884.8 1002 54.0
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 5.8e-252 875.2 1026 50.8
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 1.7e-248 863.6 1269 44.1
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.3e-238 830.9 722 63.2
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 5.8e-236 822.0 1143 43.4
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 1.9e-223 780.4 869 51.6
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 1.8e-221 773.9 848 51.8
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.2e-204 718.0 937 46.7
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 9.4e-194 681.8 595 61.2
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 6.3e-190 669.1 490 72.0
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 3.4e-175 620.2 1017 39.2
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.0e-168 598.6 607 55.2
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 5.2e-168 596.3 521 63.3
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 1.7e-166 591.3 1104 36.4
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 1.7e-158 564.7 613 55.3
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 2.3e-155 554.3 500 60.0
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 4.7e-153 546.6 1153 34.3
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.0e-151 541.2 768 43.1
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 7.5e-143 512.7 601 49.8
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 6.8e-136 489.6 1108 34.1
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 2.6e-135 487.6 659 46.7
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.6e-132 476.9 439 59.5
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 7.1e-125 453.0 543 50.6
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 1.1e-120 439.1 516 48.3
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 1.4e-101 375.6 506 45.7
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 2.2e-94 351.7 736 34.0
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 5.7e-90 337.0 382 52.9
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 4.5e-87 327.4 418 49.0
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 2.5e-85 321.6 433 48.3
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 1.1e-80 306.2 260 65.8
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.3e-65 256.1 252 57.1
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 5.5e-61 240.7 918 27.0
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.1e-56 224.6 175 70.9
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 9.1e-56 223.4 241 51.9
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.9e-53 215.7 253 47.4
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.1e-52 212.2 258 47.3
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.1e-48 199.9 575 32.2
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.4e-48 199.5 233 51.9
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 4.1e-48 198.0 348 37.9
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.9e-47 194.1 243 48.6
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 1.0e-43 183.3 107 83.2
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 6.6e-38 164.1 104 80.8
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.6e-37 161.0 123 64.2
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 1.5e-29 136.3 1088 21.7
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 2.3e-27 129.0 93 71.0
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.1e-27 128.6 112 61.6
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.6e-26 125.6 247 34.4
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 4.4e-26 124.8 114 62.3
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 2.7e-23 115.5 71 84.5
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.0e-22 113.6 68 82.4
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 1.1e-21 110.2 156 45.5
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 3.3e-21 108.6 97 59.8
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.1e-20 105.9 98 54.1
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 6.2e-20 104.4 97 57.7
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.1e-19 103.6 65 73.8
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.4e-19 103.2 99 57.6
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.1e-16 93.6 75 57.3
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.2e-16 92.0 61 75.4
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 6.0e-15 87.8 102 50.0
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.7e-14 86.3 102 50.0
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.0e-14 85.5 76 60.5
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 1.3e-12 80.1 74 60.8
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.6e-12 78.6 121 35.5
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 6.9e-11 74.3 79 54.4
RcHm_v2.0_Chr7g0188101 Rosa chinensis HOM05D000087 ORTHO05D005735 1.5e-10 73.2 86 45.3
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.0e-10 72.8 69 55.1
CARHR293860 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.6e-10 72.4 77 46.8
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 7.6e-10 70.9 96 45.8
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.2e-09 69.3 64 60.9
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.8e-09 68.6 91 47.3
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.9e-08 66.2 63 60.3
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.6e-07 61.6 76 50.0


User provided reference genes

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