Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 2477.6 1234 100.0
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 2145.9 1268 86.3
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1794.6 1239 75.2
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1778.5 1223 75.2
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 0.0e+00 1642.9 1266 67.7
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1319.7 1299 55.4
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 0.0e+00 1305.0 1257 55.8
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 0.0e+00 1273.1 1248 54.8
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 0.0e+00 1271.5 1254 54.9
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1261.1 1253 54.5
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 0.0e+00 1251.9 1240 54.9
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1251.9 1252 54.2
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 0.0e+00 1250.0 1252 54.2
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1241.5 1263 53.8
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 0.0e+00 1224.5 1034 63.6
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 0.0e+00 1195.6 1275 51.8
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 0.0e+00 1192.6 1320 50.7
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 0.0e+00 1171.4 1292 51.0
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 0.0e+00 1164.1 1294 49.5
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 0.0e+00 1158.3 1250 50.9
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 0.0e+00 1157.9 1257 51.7
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 0.0e+00 1142.1 1256 50.2
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 0.0e+00 1134.4 1238 52.6
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 0.0e+00 1133.2 1252 51.0
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 0.0e+00 1125.9 1267 52.1
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 0.0e+00 1120.5 1249 51.1
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 0.0e+00 1095.5 1247 50.2
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 0.0e+00 1094.7 1250 49.4
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 0.0e+00 1078.9 1256 49.2
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 0.0e+00 1077.8 1237 49.3
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 8.4e-312 1074.3 1247 50.3
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 1.9e-309 1066.2 1252 48.9
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 1.3e-291 1006.9 1039 53.0
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 3.9e-291 1005.4 1296 46.3
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 7.6e-287 991.1 1129 49.5
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 1.5e-282 976.9 1263 45.9
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 2.5e-282 976.1 1264 45.9
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 8.4e-278 961.1 1294 45.0
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 1.4e-277 960.3 1278 44.6
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.8e-273 946.0 1255 45.3
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 1.7e-270 936.8 1269 45.2
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 5.5e-269 931.8 1302 42.5
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 5.7e-266 921.8 1427 41.6
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 4.8e-265 918.7 1265 43.1
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 8.2e-265 917.9 1266 44.2
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 4.1e-264 915.6 1266 44.2
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 1.7e-262 910.2 1265 43.6
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 7.2e-261 904.8 1263 44.0
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 8.7e-259 897.9 1251 43.7
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 8.7e-259 897.9 1280 42.3
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 3.7e-257 892.5 1296 43.1
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 5.3e-248 862.1 1276 41.7
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.9e-245 853.6 791 55.0
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 3.0e-243 846.3 1293 41.5
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 3.7e-241 839.3 1235 41.4
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 1.6e-239 833.9 895 52.6
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 3.5e-239 832.8 1281 40.5
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 4.7e-236 822.4 966 49.1
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.3e-233 814.3 807 53.2
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.2e-223 781.2 1164 41.8
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 7.2e-221 771.9 1241 39.7
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 5.2e-219 765.8 1249 39.3
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 4.5e-215 752.7 808 50.5
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 1.0e-214 751.5 1240 39.0
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 1.7e-214 750.7 1241 38.8
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 2.9e-214 750.0 1243 38.7
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 3.3e-213 746.5 1248 39.1
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 3.6e-212 743.0 1248 38.5
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 6.1e-212 742.3 1248 39.0
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 5.2e-211 739.2 1093 42.3
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 6.4e-209 732.3 1255 38.6
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 4.3e-205 719.5 859 47.5
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 4.0e-203 713.0 1278 37.2
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 1.5e-202 711.1 1247 37.8
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.5e-194 684.5 844 46.8
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 4.4e-194 682.9 952 44.5
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.8e-187 661.0 1504 32.8
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 2.8e-172 610.5 1249 35.5
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 3.9e-166 590.1 752 49.1
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 1.9e-165 587.8 1098 36.7
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.6e-156 558.1 627 49.0
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 1.5e-149 535.0 922 39.0
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 4.8e-132 476.9 1348 28.1
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.2e-130 472.2 483 50.3
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 2.2e-124 451.4 1650 26.3
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 1.2e-122 445.7 335 66.3
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 1.3e-121 442.2 1570 25.9
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 3.8e-121 440.7 389 57.3
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 3.6e-119 434.1 350 62.9
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 1.2e-117 429.1 441 51.9
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 2.2e-116 424.9 532 42.7
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 6.3e-116 423.3 335 64.8
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 7.2e-112 409.8 335 61.8
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 4.1e-107 394.0 881 33.1
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 3.2e-99 367.9 290 62.8
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 3.6e-79 301.2 365 50.7
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 4.6e-74 284.3 254 58.3
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 1.7e-73 282.3 468 40.8
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 7.8e-66 256.9 429 35.0
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 4.8e-63 247.7 942 25.4
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.8e-62 245.7 252 51.2
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 4.4e-61 241.1 252 49.6
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 6.4e-60 237.3 345 40.0
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 6.4e-60 237.3 345 40.0
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 5.4e-59 234.2 226 56.2
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 2.5e-48 198.7 209 53.1
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 7.4e-48 197.2 555 27.9
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 5.8e-45 187.6 573 25.3
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 1.9e-40 172.6 207 47.3
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 1.3e-39 169.9 198 48.0
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 2.1e-39 169.1 488 30.3
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 2.2e-31 142.5 345 30.1
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 3.7e-31 141.7 344 34.3
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 1.3e-28 133.3 395 31.6
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 4.2e-27 128.3 193 41.5
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 8.8e-25 120.6 122 48.4
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 1.7e-23 116.3 183 37.2
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 8.2e-23 114.0 163 42.3
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 4.5e-21 108.2 161 40.4
vmacro13662 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 4.2e-19 101.7 229 35.8
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 2.7e-18 99.0 207 33.8
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.3e-17 95.9 143 42.0
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 3.0e-17 95.5 210 34.8
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 4.4e-16 91.7 347 27.7
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 4.4e-16 91.7 111 42.3
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 2.6e-13 82.4 80 47.5
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 2.9e-12 79.0 112 44.6
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 9.4e-11 73.9 81 53.1
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 2.1e-10 72.8 97 42.3
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.7e-10 72.4 99 38.4
DCAR_005448 Daucus carota HOM05D005395 ORTHO05D006352 6.1e-10 71.2 81 51.9


User provided reference genes

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