Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 1.3e-38 162.5 77 100.0
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 7.1e-26 120.2 78 78.2
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 4.3e-23 110.9 71 73.2
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 1.2e-20 102.8 69 69.6
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 5.9e-20 100.5 66 68.2
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 1.3e-19 99.4 69 65.2
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 1.3e-19 99.4 47 83.0
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 2.9e-19 98.2 74 62.2
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 2.9e-19 98.2 73 64.4
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 3.8e-19 97.8 75 61.3
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 5.0e-19 97.4 69 63.8
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 6.5e-19 97.1 68 64.7
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 6.5e-19 97.1 69 65.2
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 6.5e-19 97.1 69 65.2
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 6.5e-19 97.1 69 65.2
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 2.5e-18 95.1 69 63.8
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 9.3e-18 93.2 49 79.6
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 4.6e-17 90.9 67 59.7
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 4.6e-17 90.9 69 65.2
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 7.9e-17 90.1 70 62.9
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 1.8e-16 89.0 69 60.9
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 8.7e-16 86.7 68 52.9
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 3.3e-15 84.7 72 58.3
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 3.3e-15 84.7 70 61.4
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 3.3e-15 84.7 69 58.0
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 3.3e-15 84.7 70 61.4
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 3.3e-15 84.7 69 58.0
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 3.3e-15 84.7 72 52.8
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.3e-14 82.8 69 58.0
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 2.8e-14 81.6 73 54.8
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 8.2e-14 80.1 48 64.6
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.4e-13 79.3 69 53.6
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 5.3e-13 77.4 70 58.6
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 6.9e-13 77.0 68 50.0
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 1.5e-12 75.9 62 58.1
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.0e-12 75.5 68 48.5
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.0e-12 75.5 79 51.9
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 3.4e-12 74.7 67 50.7
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.5e-12 74.3 68 50.0
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 7.7e-12 73.6 68 50.0
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 7.7e-12 73.6 68 50.0
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 1.0e-11 73.2 72 50.0
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.7e-11 72.4 67 50.7
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 1.7e-11 72.4 68 50.0
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.7e-11 72.4 71 46.5
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.7e-11 72.4 81 50.6
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 2.2e-11 72.0 66 56.1
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.9e-11 71.6 60 51.7
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.9e-11 71.6 72 50.0
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 2.9e-11 71.6 67 44.8
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 5.0e-11 70.9 70 51.4
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 5.0e-11 70.9 76 50.0
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.1e-10 69.7 50 64.0
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.9e-10 68.9 71 47.9
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.5e-10 68.6 67 52.2
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.5e-10 68.6 70 48.6
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 3.2e-10 68.2 72 47.2
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.2e-10 67.8 46 56.5
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 5.5e-10 67.4 70 51.4
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.5e-10 67.4 67 50.7
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.5e-10 67.4 67 50.7
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 5.5e-10 67.4 67 46.3
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 5.5e-10 67.4 74 48.6
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 7.2e-10 67.0 67 50.7
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.2e-10 67.0 67 50.7
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 7.2e-10 67.0 71 47.9
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 1.2e-09 66.2 74 48.6
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.2e-09 66.2 68 51.5
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 1.6e-09 65.9 68 50.0
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 2.1e-09 65.5 67 49.3
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 2.7e-09 65.1 71 47.9
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 3.6e-09 64.7 69 50.7
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 3.6e-09 64.7 52 57.7
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 4.6e-09 64.3 61 47.5
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 4.6e-09 64.3 68 42.6
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 6.1e-09 63.9 74 43.2
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 7.9e-09 63.5 74 43.2
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 7.9e-09 63.5 67 47.8
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.0e-08 63.2 64 53.1
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 1.0e-08 63.2 64 53.1
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.0e-08 63.2 64 51.6
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 1.8e-08 62.4 72 45.8
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 3.9e-08 61.2 50 52.0
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 3.9e-08 61.2 76 46.1
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 3.9e-08 61.2 64 51.6
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 5.1e-08 60.8 76 48.7
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 5.1e-08 60.8 72 45.8
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.5e-07 59.3 43 62.8
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.0e-07 58.9 68 44.1
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 9.7e-07 56.6 80 40.0
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 9.7e-07 56.6 76 38.2
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.3e-06 56.2 76 43.4
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 2.2e-06 55.5 66 50.0
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.2e-06 55.5 72 45.8
MBI02_g08723_MAGBIO Magnolia biondii HOM05D007628 ORTHO05D007342 2.8e-06 55.1 36 61.1
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 2.8e-06 55.1 72 45.8
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 6.3e-06 53.9 50 48.0


User provided reference genes

Program Settings