Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 5.4e-181 637.5 313 100.0
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 5.1e-163 577.8 314 88.9
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.3e-161 573.2 313 90.4
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 2.8e-161 572.0 314 88.9
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.8e-160 569.3 314 88.9
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 3.4e-159 565.1 313 89.1
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.7e-158 562.8 314 86.9
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 2.2e-158 562.4 313 88.2
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 6.4e-158 560.8 314 87.9
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 6.4e-158 560.8 314 86.9
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 8.4e-158 560.5 313 88.8
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 1.1e-157 560.1 321 86.3
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.9e-157 559.3 313 87.9
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 1.9e-157 559.3 313 88.2
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.2e-157 558.5 328 85.4
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 2.1e-156 555.8 313 88.2
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 6.0e-156 554.3 314 86.0
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 6.0e-156 554.3 314 86.6
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 1.0e-155 553.5 314 85.0
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 1.0e-155 553.5 313 86.3
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 2.3e-155 552.4 313 86.9
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 3.0e-155 552.0 314 86.0
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 1.1e-154 550.1 313 86.9
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.9e-154 549.3 315 86.3
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 2.5e-154 548.9 313 86.6
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 2.5e-154 548.9 314 85.0
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 4.3e-154 548.1 314 84.1
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 7.4e-154 547.4 315 86.7
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 9.6e-154 547.0 314 84.7
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 1.3e-153 546.6 314 85.4
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 1.6e-153 546.2 313 85.3
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 2.1e-153 545.8 314 85.7
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 2.1e-153 545.8 313 85.9
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 2.8e-153 545.4 314 85.7
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 4.8e-153 544.7 314 86.0
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 8.1e-153 543.9 313 86.6
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 8.1e-153 543.9 314 85.4
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 1.1e-152 543.5 336 81.2
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 1.4e-152 543.1 313 85.0
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.8e-152 542.7 314 85.7
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.4e-152 542.3 315 85.4
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 2.4e-152 542.3 315 85.4
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 5.3e-152 541.2 314 85.0
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.6e-151 538.9 316 85.1
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.4e-151 538.5 315 84.4
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 3.4e-151 538.5 314 83.8
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 3.4e-151 538.5 315 83.8
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 4.5e-151 538.1 314 84.1
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 5.8e-151 537.7 313 83.1
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 7.6e-151 537.3 314 84.1
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 9.9e-151 537.0 313 83.1
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 9.9e-151 537.0 313 83.4
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 1.3e-150 536.6 314 84.1
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.3e-150 536.6 313 83.1
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.7e-150 536.2 314 84.7
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.7e-150 536.2 313 84.7
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 2.2e-150 535.8 313 83.1
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 2.2e-150 535.8 316 84.5
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 2.9e-150 535.4 313 83.1
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 2.9e-150 535.4 314 82.5
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 4.9e-150 534.6 314 83.8
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 8.4e-150 533.9 316 84.2
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.1e-149 533.5 314 84.7
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.4e-149 532.3 309 86.4
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.4e-149 532.3 313 82.7
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 3.2e-149 531.9 314 83.1
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 4.2e-149 531.6 314 82.2
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 4.2e-149 531.6 314 82.8
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 9.3e-149 530.4 314 81.5
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 3.5e-148 528.5 314 83.4
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 4.6e-148 528.1 313 81.2
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 6.0e-148 527.7 314 83.4
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 7.9e-148 527.3 313 82.4
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 7.9e-148 527.3 314 82.8
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 7.9e-148 527.3 314 81.2
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 1.0e-147 526.9 314 81.2
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.3e-147 526.6 314 81.2
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 2.3e-147 525.8 314 82.8
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 8.7e-147 523.9 314 81.8
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-146 523.5 313 81.8
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.3e-146 521.9 313 84.0
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 5.6e-146 521.2 313 81.2
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.6e-145 519.6 312 81.4
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.6e-145 519.6 313 80.8
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.8e-145 518.8 337 77.2
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 8.2e-145 517.3 313 80.2
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 8.2e-145 517.3 313 79.9
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 8.2e-145 517.3 314 81.2
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 5.3e-144 514.6 318 78.6
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 1.5e-143 513.1 382 70.7
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 7.6e-143 510.8 326 79.4
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 1.3e-142 510.0 305 82.3
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.3e-142 510.0 314 80.9
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 1.4e-141 506.5 314 79.9
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 1.4e-141 506.5 316 80.4
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.4e-141 506.5 316 80.7
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.4e-141 506.5 316 80.4
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.9e-141 506.1 314 79.3
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.5e-141 505.8 316 80.4
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.5e-141 505.8 316 80.4
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.2e-141 505.0 316 80.1
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.2e-141 505.0 316 80.1
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 9.3e-141 503.8 314 79.6
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 1.2e-140 503.4 314 80.3
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 4.6e-140 501.5 311 78.8
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.3e-139 500.0 320 78.8
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 2.3e-139 499.2 314 79.0
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 3.9e-139 498.4 316 80.4
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-137 493.4 315 78.4
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 1.4e-136 490.0 309 79.0
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 3.1e-136 488.8 285 83.2
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 7.6e-135 484.2 316 77.5
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 2.9e-134 482.3 288 82.3
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.4e-133 479.9 282 84.8
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 9.4e-133 477.2 316 76.9
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 1.6e-132 476.5 293 77.5
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.4e-131 473.4 283 81.3
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 5.1e-131 471.5 312 76.9
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 1.1e-130 470.3 313 76.0
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 3.3e-130 468.8 463 56.6
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.7e-130 468.0 313 76.4
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 9.7e-130 467.2 314 75.8
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 6.9e-128 461.1 313 74.8
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 2.0e-127 459.5 313 74.4
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 2.0e-127 459.5 317 71.3
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.8e-123 446.4 310 72.9
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.1e-122 443.7 313 71.9
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 6.5e-118 427.9 240 87.1
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.7e-116 422.5 316 67.4
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 3.6e-116 422.2 313 66.5
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 3.7e-113 412.1 260 80.0
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 6.3e-113 411.4 284 70.8
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 5.0e-110 401.7 313 64.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.0e-95 353.2 213 79.3
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 3.7e-81 305.8 252 61.1
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.4e-80 303.9 173 86.1
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.0e-79 300.1 177 83.6
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 6.8e-75 285.0 192 74.0
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 5.1e-70 268.9 166 80.7
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 8.6e-70 268.1 309 47.9
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 8.6e-70 268.1 311 47.3
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.4e-67 260.8 151 82.1
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.4e-67 260.8 151 82.1
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 2.9e-65 253.1 273 50.9
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.1e-60 236.9 168 66.7
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 4.7e-60 235.7 276 50.7
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.4e-59 234.2 186 66.7
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 6.4e-57 225.3 299 42.1
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 3.5e-55 219.5 112 93.8
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 1.2e-52 211.1 307 40.7
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.9e-49 199.9 182 57.1
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 8.4e-49 198.4 300 44.3
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.2e-47 194.5 149 69.8
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.3e-46 190.3 142 69.7
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.8e-43 180.6 98 87.8
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.0e-43 178.3 179 57.5
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 1.9e-40 170.6 112 68.8
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 7.1e-40 168.7 112 67.9
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 7.1e-40 168.7 112 67.9
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 9.3e-40 168.3 129 61.2
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 3.0e-38 163.3 139 59.7
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.0e-38 163.3 116 74.1
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.1e-37 161.4 168 53.6
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 5.3e-35 152.5 276 35.9
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 1.4e-27 127.9 107 60.7
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 1.4e-27 127.9 114 61.4
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 6.9e-27 125.6 68 82.4
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 3.9e-22 109.8 94 61.7
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 3.9e-22 109.8 94 61.7
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 3.9e-22 109.8 60 83.3
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 7.4e-21 105.5 89 64.0
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 2.2e-20 104.0 72 65.3
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 2.6e-18 97.1 53 83.0
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 5.0e-17 92.8 117 42.7
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 4.2e-16 89.7 47 87.2
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 9.4e-16 88.6 53 75.5
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 3.6e-15 86.7 52 78.8
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 3.9e-14 83.2 102 51.0
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 1.0e-06 58.5 44 65.9


User provided reference genes

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