Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 3.0e-98 364.0 189 100.0
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 1.4e-55 222.2 195 64.1
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 1.6e-54 218.8 191 63.9
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 1.5e-52 212.2 191 61.8
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 1.2e-51 209.1 195 61.5
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 3.4e-49 201.1 198 60.6
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 7.5e-49 199.9 193 58.0
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 8.1e-43 179.9 177 58.2
CiPaw.09G007900 Carya illinoinensis HOM05D007410 ORTHO05D009500 5.2e-42 177.2 190 55.3
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 1.9e-39 168.7 193 55.4
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.4e-34 152.5 193 52.3
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 3.1e-34 151.4 191 49.2
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 3.1e-34 151.4 191 49.2
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 6.8e-34 150.2 192 48.4
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 6.8e-34 150.2 122 63.9
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 1.5e-33 149.1 189 46.0
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 4.2e-31 141.0 132 59.8
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 1.6e-30 139.0 151 54.3
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 5.1e-29 134.0 182 48.4
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 6.6e-29 133.7 185 47.0
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.9e-28 132.1 160 50.0
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 3.6e-27 127.9 163 47.9
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 1.1e-26 126.3 204 41.2
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 1.1e-26 126.3 133 46.6
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 2.6e-25 121.7 148 49.3
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 2.6e-25 121.7 181 43.1
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 4.4e-25 120.9 143 52.4
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 1.3e-24 119.4 155 46.5
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 1.3e-24 119.4 128 50.0
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 8.4e-24 116.7 125 52.8
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 1.1e-23 116.3 185 44.3
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 1.9e-23 115.5 184 42.4
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 4.2e-23 114.4 185 37.8
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 5.4e-23 114.0 182 42.9
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 7.1e-23 113.6 163 42.3
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 1.2e-22 112.8 159 44.0
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 2.1e-22 112.1 189 41.3
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 2.7e-22 111.7 184 40.2
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 3.5e-22 111.3 181 38.7
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 3.5e-22 111.3 184 40.2
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 6.0e-22 110.5 168 39.9
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 6.0e-22 110.5 134 50.0
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 1.0e-21 109.8 193 39.9
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 2.3e-21 108.6 188 38.3
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 3.0e-21 108.2 163 37.4
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 8.7e-21 106.7 151 46.4
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 1.1e-20 106.3 192 39.6
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 1.5e-20 105.9 168 36.9
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 1.5e-20 105.9 147 46.3
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 2.5e-20 105.1 134 48.5
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 5.6e-20 104.0 134 46.3
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 7.3e-20 103.6 128 48.4
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 1.3e-19 102.8 190 37.9
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 2.1e-19 102.1 176 39.2
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 2.1e-19 102.1 128 46.1
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 2.8e-19 101.7 127 48.0
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 2.8e-19 101.7 170 38.2
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 4.8e-19 100.9 160 41.9
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 8.1e-19 100.1 152 44.1
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 1.8e-18 99.0 128 43.0
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 5.3e-18 97.4 125 40.8
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 1.2e-17 96.3 190 37.4
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 2.0e-17 95.5 171 38.0
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 2.0e-17 95.5 153 40.5
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 2.6e-17 95.1 196 36.7
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 2.6e-17 95.1 190 36.8
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 3.4e-17 94.7 163 40.5
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 4.5e-17 94.4 136 46.3
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 7.6e-17 93.6 171 35.7
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 9.9e-17 93.2 160 40.6
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 1.7e-16 92.4 160 40.6
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 2.9e-16 91.7 190 35.8
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 2.9e-16 91.7 114 47.4
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 3.8e-16 91.3 159 40.9
Ciclev10033972m.g Citrus clementina HOM05D007410 ORTHO05D009500 2.4e-15 88.6 148 41.9
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 3.2e-15 88.2 157 38.2
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 9.3e-15 86.7 134 39.6
Actinidia39878 Actinidia chinensis HOM05D007410 ORTHO05D009500 8.7e-13 80.1 57 63.2
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 1.5e-12 79.3 174 56.9
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 2.5e-12 78.6 165 35.8
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 7.4e-12 77.0 136 35.3
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 2.1e-11 75.5 75 49.3
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.1e-11 75.5 47 68.1
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 6.2e-11 73.9 146 39.0
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 1.4e-10 72.8 189 36.0
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 1.5e-09 69.3 174 74.1
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 3.2e-07 61.6 135 32.6
Thhalv10015810m.g Eutrema salsugineum HOM05D007410 ORTHO05D009500 1.6e-06 59.3 75 40.0
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 2.7e-06 58.5 45 64.4


User provided reference genes

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