Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 0.0e+00 1402.5 743 100.0
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 8.1e-268 927.2 763 68.4
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 2.9e-265 918.7 763 67.9
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.9e-257 892.1 763 64.2
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.1e-252 875.9 759 63.8
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 3.9e-246 855.1 769 61.4
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 5.7e-245 851.3 764 61.9
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 7.4e-245 850.9 759 61.8
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 2.1e-244 849.4 768 60.9
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 5.9e-242 841.3 782 59.6
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 5.5e-240 834.7 770 61.6
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.6e-239 833.2 768 59.9
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 6.1e-239 831.2 778 60.3
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 3.0e-238 828.9 772 59.5
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 8.7e-238 827.4 780 59.6
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 8.7e-238 827.4 780 59.6
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 1.3e-236 823.5 760 60.1
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 2.8e-236 822.4 789 59.1
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 2.8e-236 822.4 764 60.3
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 4.8e-236 821.6 768 59.8
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 4.8e-236 821.6 764 60.5
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 6.3e-236 821.2 764 60.2
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 8.2e-236 820.8 759 60.5
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 3.1e-235 818.9 764 60.2
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 1.2e-234 817.0 760 60.0
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 1.5e-234 816.6 765 61.4
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.1e-232 810.4 783 57.6
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 3.2e-232 808.9 763 61.7
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 4.2e-232 808.5 760 60.8
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 6.1e-231 804.7 760 59.3
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 2.3e-230 802.7 799 56.4
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 3.9e-230 802.0 772 58.9
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.1e-230 801.6 760 59.2
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.5e-229 800.0 761 59.5
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 3.3e-229 798.9 785 57.6
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 6.9e-227 791.2 772 58.9
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.5e-226 790.0 796 56.7
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.0e-226 789.6 752 59.2
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 2.9e-225 785.8 769 57.7
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 8.5e-225 784.3 763 59.2
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 1.4e-224 783.5 756 57.7
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 4.2e-224 781.9 763 59.0
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.2e-223 780.4 756 57.4
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 1.2e-223 780.4 741 59.4
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 1.6e-223 780.0 761 58.5
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.0e-222 777.3 761 58.3
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 1.8e-222 776.5 758 59.0
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.3e-222 776.2 761 58.3
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 3.9e-222 775.4 784 56.5
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.2e-222 775.0 761 58.3
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.7e-222 774.6 759 58.4
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 5.3e-219 765.0 767 57.2
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 5.3e-219 765.0 785 58.1
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 3.8e-217 758.8 761 57.3
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 5.0e-217 758.4 753 57.5
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 5.5e-216 755.0 764 56.7
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 6.1e-215 751.5 763 57.9
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.0e-214 750.7 787 54.3
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.0e-214 750.7 788 56.0
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 1.0e-214 750.7 754 57.3
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 1.4e-214 750.4 751 57.1
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 1.3e-212 743.8 655 61.4
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 4.5e-210 735.3 767 56.3
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 2.2e-209 733.0 765 55.0
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 4.2e-208 728.8 770 55.1
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.2e-207 727.2 765 54.5
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.6e-207 726.9 761 55.5
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 2.1e-207 726.5 752 54.9
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 3.6e-207 725.7 768 54.0
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 4.7e-207 725.3 781 53.9
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 6.1e-207 724.9 705 57.7
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 6.8e-206 721.5 749 55.3
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.6e-205 719.5 760 55.3
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 5.7e-205 718.4 783 52.1
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 5.7e-205 718.4 794 52.3
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 6.3e-204 714.9 756 53.4
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 4.1e-203 712.2 708 57.8
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 2.7e-202 709.5 764 53.5
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 2.7e-202 709.5 747 55.2
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 4.5e-202 708.8 751 54.3
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 7.7e-202 708.0 753 54.1
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 3.8e-201 705.7 762 54.5
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 9.5e-200 701.0 784 53.6
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 1.6e-199 700.3 756 54.8
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 8.0e-199 698.0 764 52.9
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 8.0e-199 698.0 764 53.1
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 8.0e-199 698.0 428 80.4
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 1.0e-198 697.6 793 52.8
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 3.0e-198 696.0 753 53.7
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 5.2e-198 695.3 743 53.7
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 2.0e-197 693.3 773 52.3
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 5.7e-197 691.8 743 53.6
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 5.7e-197 691.8 777 50.5
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 5.7e-197 691.8 758 52.5
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 1.3e-196 690.6 775 52.0
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 8.3e-196 688.0 760 51.8
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 2.4e-195 686.4 760 51.6
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 2.4e-195 686.4 760 51.6
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.1e-192 677.6 403 82.4
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 2.5e-192 676.4 780 52.8
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.3e-192 676.0 633 59.6
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 5.6e-192 675.2 756 51.2
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 1.7e-188 663.7 717 54.3
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 6.4e-188 661.8 396 79.3
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 8.3e-188 661.4 784 49.4
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 7.3e-184 648.3 762 49.3
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 3.6e-183 646.0 773 49.2
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 4.0e-182 642.5 745 50.3
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.2e-181 641.0 754 51.6
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 6.4e-172 608.6 751 48.7
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 3.5e-170 602.8 812 45.9
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 3.5e-170 602.8 812 47.7
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 6.6e-169 598.6 768 49.7
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 2.5e-168 596.7 401 74.1
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.2e-167 594.3 402 71.6
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 1.6e-167 594.0 759 48.4
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 5.2e-166 589.0 363 77.4
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 3.3e-160 569.7 314 86.6
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 6.6e-153 545.4 683 48.8
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 1.5e-152 544.3 770 45.5
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 1.9e-152 543.9 299 86.0
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 6.2e-151 538.9 749 46.2
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 8.4e-148 528.5 744 43.3
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 1.6e-146 524.2 314 80.9
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 2.3e-145 520.4 783 41.3
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 3.1e-142 510.0 771 41.9
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 9.9e-141 505.0 770 41.0
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 1.2e-130 471.5 312 72.4
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 6.0e-130 469.2 807 38.2
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 7.6e-125 452.2 299 72.2
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 1.8e-113 414.5 316 69.9
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 2.0e-109 401.0 686 38.5
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 4.8e-103 379.8 256 70.3
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 4.8e-103 379.8 256 70.3
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.3e-71 275.4 224 64.7
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.0e-56 224.9 344 38.4
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 2.0e-40 171.8 168 64.3
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 4.3e-35 154.1 196 52.0
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 6.9e-33 146.7 177 49.2
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 6.4e-31 140.2 87 77.0
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 3.5e-29 134.4 193 47.2
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.6e-26 125.6 157 51.0
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 3.1e-25 121.3 92 70.7
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 1.7e-23 115.5 160 41.9
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 3.5e-21 107.8 129 45.7
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 6.9e-17 93.6 138 50.0
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.3e-15 89.4 133 48.9
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 5.5e-14 84.0 100 55.0
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 3.5e-13 81.3 148 43.9
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 2.5e-11 75.1 99 50.5
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 5.3e-09 67.4 63 60.3
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 4.5e-08 64.3 162 39.5


User provided reference genes

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