Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 1.3e-96 356.7 216 100.0
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 9.9e-49 197.6 218 58.7
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 1.0e-45 187.6 214 57.0
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 2.7e-38 162.9 160 63.8
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 7.8e-38 161.4 204 53.4
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 1.7e-37 160.2 204 53.4
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 6.6e-37 158.3 202 62.9
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 7.3e-36 154.8 202 61.9
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 2.1e-35 153.3 213 59.2
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 2.1e-35 153.3 217 59.9
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 2.1e-35 153.3 221 52.9
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 8.1e-35 151.4 227 51.5
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 1.1e-34 151.0 166 59.6
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 2.4e-34 149.8 133 66.9
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.4e-34 149.8 133 66.9
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 5.3e-34 148.7 135 66.7
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 9.9e-33 144.4 162 61.1
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.7e-32 143.7 155 59.4
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 1.7e-32 143.7 162 62.3
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 6.4e-32 141.7 160 58.8
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 8.4e-32 141.4 205 51.2
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 8.4e-32 141.4 148 58.1
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 1.1e-31 141.0 174 52.3
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 1.4e-31 140.6 200 49.5
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 1.9e-31 140.2 204 51.0
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.9e-31 140.2 162 54.9
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 3.2e-31 139.4 204 49.0
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 3.2e-31 139.4 209 52.2
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 4.2e-31 139.0 126 66.7
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 4.2e-31 139.0 141 60.3
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 4.2e-31 139.0 141 60.3
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 4.2e-31 139.0 104 77.9
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 5.4e-31 138.7 170 52.4
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 5.4e-31 138.7 194 56.2
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 7.1e-31 138.3 129 66.7
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 9.3e-31 137.9 185 53.0
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 1.6e-30 137.1 128 63.3
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 1.6e-30 137.1 166 55.4
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 2.1e-30 136.7 130 63.8
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 2.7e-30 136.3 158 55.7
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 4.6e-30 135.6 153 57.5
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 4.6e-30 135.6 171 50.3
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 1.0e-29 134.4 202 47.5
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 1.8e-29 133.7 121 68.6
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 1.8e-29 133.7 222 51.4
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 2.3e-29 133.3 200 49.5
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 3.0e-29 132.9 155 54.2
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 3.9e-29 132.5 196 51.0
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 3.9e-29 132.5 218 45.0
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 8.7e-29 131.3 166 55.4
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 4.3e-28 129.0 105 65.7
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 4.3e-28 129.0 105 67.6
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 7.4e-28 128.3 162 53.1
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 1.3e-27 127.5 148 57.4
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 1.3e-27 127.5 81 84.0
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 1.3e-27 127.5 143 57.3
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 1.3e-27 127.5 89 76.4
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.6e-27 127.1 126 55.6
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 2.1e-27 126.7 220 45.0
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 2.8e-27 126.3 148 56.1
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 2.8e-27 126.3 89 75.3
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 3.6e-27 125.9 89 75.3
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 4.8e-27 125.6 85 82.4
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 4.8e-27 125.6 161 56.5
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 6.2e-27 125.2 161 51.6
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 2.4e-26 123.2 209 48.8
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 3.1e-26 122.9 148 54.7
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 3.1e-26 122.9 149 58.4
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 4.0e-26 122.5 86 75.6
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 4.0e-26 122.5 146 52.1
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 4.0e-26 122.5 97 73.2
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 5.3e-26 122.1 163 51.5
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 6.9e-26 121.7 151 55.6
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 6.9e-26 121.7 137 64.2
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 9.0e-26 121.3 156 50.6
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 9.0e-26 121.3 213 45.1
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 3.4e-25 119.4 80 82.5
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 4.5e-25 119.0 172 48.8
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 4.5e-25 119.0 200 45.0
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 5.8e-25 118.6 84 77.4
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 5.8e-25 118.6 92 64.1
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 5.8e-25 118.6 126 58.7
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 7.6e-25 118.2 140 55.7
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 7.6e-25 118.2 204 44.1
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 1.3e-24 117.5 96 70.8
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 4.9e-24 115.5 145 52.4
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 4.9e-24 115.5 86 69.8
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 6.4e-24 115.2 158 50.0
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 6.4e-24 115.2 147 51.7
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.4e-23 114.0 75 81.3
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 2.4e-23 113.2 122 57.4
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 5.5e-23 112.1 122 57.4
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 9.3e-23 111.3 122 57.4
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 1.6e-22 110.5 127 52.0
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 2.7e-22 109.8 151 53.6
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 3.5e-22 109.4 86 70.9
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 4.6e-22 109.0 122 57.4
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 7.9e-22 108.2 88 64.8
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 2.3e-21 106.7 123 56.1
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 8.7e-21 104.8 131 51.1
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 2.5e-20 103.2 94 62.8
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 7.4e-20 101.7 92 59.8
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 9.6e-20 101.3 122 53.3
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 3.7e-19 99.4 168 46.4
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 8.1e-19 98.2 131 48.9
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 3.1e-18 96.3 163 41.7
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 3.1e-18 96.3 130 51.5
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 4.0e-18 95.9 91 57.1
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 5.3e-18 95.5 91 58.2
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 6.9e-18 95.1 145 46.2
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 2.0e-17 93.6 113 54.0
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 2.6e-17 93.2 98 57.1
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 8.4e-16 88.2 101 52.5
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 3.2e-15 86.3 170 41.8
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 1.2e-14 84.3 100 54.0
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 7.9e-14 81.6 119 44.5
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 1.0e-13 81.3 153 43.8
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 2.3e-13 80.1 91 57.1
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 3.0e-13 79.7 57 73.7
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 3.0e-13 79.7 57 73.7
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 3.9e-13 79.3 55 76.4
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 3.9e-13 79.3 55 76.4
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 5.1e-13 79.0 105 48.6
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.1e-12 77.8 82 52.4
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 2.5e-12 76.6 150 42.7
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 4.8e-11 72.4 53 69.8
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 1.0e-08 64.7 85 45.9
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 1.3e-08 64.3 75 49.3


User provided reference genes

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