Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 6.1e-109 397.5 204 100.0
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.8e-85 318.9 206 81.1
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.8e-85 318.9 204 79.9
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 6.2e-85 317.8 204 78.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 8.1e-85 317.4 207 77.8
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 5.2e-84 314.7 206 78.6
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 2.0e-83 312.8 206 78.6
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 7.6e-83 310.8 205 78.0
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 4.9e-82 308.1 207 76.8
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 6.4e-82 307.8 205 77.6
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 8.4e-82 307.4 206 76.7
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.1e-81 307.0 206 79.1
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 4.1e-81 305.1 202 78.2
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 9.2e-81 303.9 201 78.6
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 5.1e-79 298.1 206 77.2
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 5.1e-79 298.1 206 76.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 5.1e-79 298.1 205 75.6
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 6.6e-79 297.7 206 76.7
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.5e-78 296.6 206 75.2
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.9e-78 296.2 203 75.9
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 4.3e-78 295.0 204 75.0
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 5.6e-78 294.7 206 74.3
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 5.6e-78 294.7 221 70.1
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 7.3e-78 294.3 206 76.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 9.6e-78 293.9 206 74.3
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.1e-77 292.7 206 73.8
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.8e-77 292.4 206 73.8
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 8.1e-77 290.8 206 74.3
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.1e-76 288.9 200 75.0
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 4.0e-76 288.5 207 70.5
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 5.2e-76 288.1 203 70.9
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 5.2e-76 288.1 206 72.3
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 5.2e-76 288.1 205 70.7
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 6.8e-76 287.7 204 74.0
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.5e-75 286.6 208 71.2
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.6e-75 285.8 193 77.7
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 2.6e-75 285.8 202 73.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 9.9e-75 283.9 193 76.2
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 9.9e-75 283.9 193 77.2
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 9.9e-75 283.9 193 77.2
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.7e-74 283.1 198 72.7
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 4.9e-74 281.6 205 74.1
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 4.9e-74 281.6 206 72.8
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 6.4e-74 281.2 202 75.2
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.4e-74 280.8 202 72.3
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.1e-73 280.4 202 72.3
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.1e-73 280.4 203 74.4
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.9e-73 279.6 205 73.7
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 4.2e-73 278.5 202 71.3
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.4e-73 278.1 204 72.5
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.4e-73 278.1 204 72.5
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 5.4e-73 278.1 206 71.8
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 5.4e-73 278.1 177 78.5
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 5.4e-73 278.1 197 71.1
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 5.4e-73 278.1 175 80.6
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 9.3e-73 277.3 202 71.3
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.2e-72 276.9 205 69.8
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.6e-72 276.6 206 71.4
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.6e-72 276.6 203 71.4
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.1e-72 276.2 199 68.8
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 2.1e-72 276.2 197 70.6
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.5e-72 275.4 208 71.2
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.5e-72 275.4 202 68.8
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 4.6e-72 275.0 208 71.6
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.8e-72 274.2 205 69.3
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.0e-71 273.9 198 72.2
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.5e-70 270.0 193 72.0
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.5e-70 269.2 201 71.1
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.5e-70 269.2 214 69.6
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 5.6e-70 268.1 203 68.5
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 9.6e-70 267.3 188 72.3
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.1e-69 266.2 205 66.8
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 6.2e-69 264.6 205 67.3
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.2e-69 264.6 193 71.0
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 8.1e-69 264.2 197 70.1
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.4e-68 263.5 203 69.0
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 4.0e-68 261.9 207 70.5
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 5.3e-68 261.5 198 67.2
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.3e-68 261.5 205 66.3
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 5.3e-68 261.5 196 69.9
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 5.3e-68 261.5 289 53.3
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 6.9e-68 261.2 205 67.8
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.2e-67 260.4 161 81.4
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.2e-67 260.4 203 67.0
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.2e-67 260.4 205 67.8
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.6e-67 259.2 205 66.3
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.9e-67 257.3 195 69.2
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.9e-66 255.8 204 64.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 4.9e-66 255.0 205 66.8
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 6.4e-66 254.6 200 67.0
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.1e-65 253.8 202 64.4
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.9e-65 253.1 205 66.3
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.9e-65 253.1 184 71.2
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.4e-65 252.7 198 69.2
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.2e-65 252.3 205 65.9
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 7.1e-65 251.1 173 73.4
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 9.3e-65 250.8 200 66.5
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 3.5e-64 248.8 161 75.2
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.5e-64 248.8 202 63.4
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 6.0e-64 248.1 181 71.3
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 7.9e-64 247.7 197 66.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-63 247.3 202 63.4
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.7e-63 246.5 211 64.5
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 3.9e-63 245.4 211 64.0
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 8.7e-63 244.2 201 67.2
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.9e-62 243.0 172 70.3
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.5e-62 242.7 195 65.6
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 7.4e-62 241.1 199 61.8
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 7.4e-62 241.1 194 65.5
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 9.6e-62 240.7 204 61.8
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-61 240.0 166 75.3
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 6.2e-61 238.0 199 67.3
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 8.1e-61 237.7 203 62.6
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.1e-60 237.3 159 76.1
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.4e-60 236.9 177 70.1
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 3.1e-60 235.7 197 63.5
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.9e-58 228.4 197 62.4
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.1e-57 227.3 206 59.2
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.9e-57 226.5 199 64.3
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 2.4e-57 226.1 165 72.7
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.6e-54 214.9 193 61.1
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.3e-53 213.8 167 64.7
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 6.9e-52 208.0 127 81.1
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 6.5e-50 201.4 204 59.3
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 8.4e-50 201.1 188 55.9
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.2e-49 199.1 135 74.8
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 2.7e-48 196.1 121 77.7
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.9e-46 189.9 185 53.5
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.3e-45 187.2 152 69.1
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.4e-44 183.7 170 54.7
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.5e-43 178.7 150 58.0
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.9e-42 176.0 204 53.4
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 6.5e-42 174.9 120 74.2
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 4.2e-41 172.2 184 54.9
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 6.1e-40 168.3 103 79.6
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 7.9e-40 167.9 106 81.1
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.3e-39 166.4 117 69.2
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.3e-38 162.5 176 52.3
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 7.7e-35 151.4 172 47.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.7e-34 150.2 149 50.3
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.2e-33 145.6 96 75.0
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.6e-30 136.3 172 48.8
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 4.5e-27 125.6 107 60.7
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 6.5e-18 95.1 97 53.6
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 6.5e-18 95.1 158 36.1
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 5.5e-17 92.0 69 62.3
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-16 90.5 210 38.1
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 3.6e-16 89.4 70 62.9
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.1e-16 88.6 60 68.3
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.4e-15 87.4 70 61.4
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 3.7e-13 79.3 183 33.3
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.6e-11 73.9 89 46.1
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.3e-10 70.9 62 58.1
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 8.5e-10 68.2 56 64.3
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.5e-09 66.6 40 77.5


User provided reference genes

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