Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 7.4e-91 337.8 263 100.0
QL10p059006 Quercus lobata HOM05D006179 ORTHO05D337919 1.8e-15 87.4 42 100.0
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 1.3e-13 81.3 36 100.0
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 1.2e-11 74.7 35 91.4
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 2.0e-11 73.9 36 88.9
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 5.8e-11 72.4 36 86.1
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 9.9e-11 71.6 36 80.6
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 9.9e-11 71.6 36 80.6
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 1.3e-10 71.2 36 80.6
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 1.3e-10 71.2 36 80.6
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 1.3e-10 71.2 35 88.6
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 1.3e-10 71.2 36 86.1
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 1.3e-10 71.2 36 86.1
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 1.3e-10 71.2 36 77.8
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 1.7e-10 70.9 36 83.3
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 1.7e-10 70.9 35 88.6
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.7e-10 70.9 36 83.3
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 1.7e-10 70.9 36 83.3
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 2.2e-10 70.5 36 83.3
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 2.2e-10 70.5 36 83.3
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 2.9e-10 70.1 36 83.3
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 2.9e-10 70.1 36 83.3
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 3.8e-10 69.7 36 80.6
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 3.8e-10 69.7 36 83.3
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 3.8e-10 69.7 36 77.8
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 3.8e-10 69.7 36 77.8
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 4.9e-10 69.3 35 82.9
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 4.9e-10 69.3 38 78.9
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 6.4e-10 68.9 36 80.6
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 6.4e-10 68.9 36 80.6
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 6.4e-10 68.9 36 80.6
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 6.4e-10 68.9 36 80.6
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 6.4e-10 68.9 36 80.6
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 8.4e-10 68.6 35 80.0
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 8.4e-10 68.6 35 82.9
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.1e-09 68.2 37 78.4
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 1.1e-09 68.2 36 83.3
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 1.1e-09 68.2 36 80.6
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 1.1e-09 68.2 36 80.6
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 1.4e-09 67.8 35 80.0
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 1.4e-09 67.8 41 70.7
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 1.4e-09 67.8 36 80.6
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 1.4e-09 67.8 36 80.6
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.4e-09 67.8 36 80.6
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 1.4e-09 67.8 32 90.6
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 1.4e-09 67.8 36 80.6
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.9e-09 67.4 36 77.8
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 2.4e-09 67.0 34 82.4
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 2.4e-09 67.0 36 77.8
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 2.4e-09 67.0 36 83.3
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 3.2e-09 66.6 36 72.2
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 3.2e-09 66.6 36 72.2
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 3.2e-09 66.6 36 77.8
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 4.2e-09 66.2 39 69.2
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 4.2e-09 66.2 36 75.0
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 4.2e-09 66.2 39 69.2
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 4.2e-09 66.2 36 75.0
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 4.2e-09 66.2 36 80.6
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 4.2e-09 66.2 39 69.2
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 5.5e-09 65.9 36 75.0
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 5.5e-09 65.9 36 75.0
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 5.5e-09 65.9 36 75.0
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 5.5e-09 65.9 36 77.8
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 5.5e-09 65.9 36 77.8
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 5.5e-09 65.9 36 77.8
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 7.1e-09 65.5 39 69.2
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 7.1e-09 65.5 36 77.8
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 7.1e-09 65.5 36 75.0
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 7.1e-09 65.5 36 77.8
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 9.3e-09 65.1 39 69.2
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 9.3e-09 65.1 34 79.4
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 1.2e-08 64.7 36 72.2
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 1.2e-08 64.7 36 77.8
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 1.2e-08 64.7 34 76.5
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 1.6e-08 64.3 36 75.0
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 1.6e-08 64.3 36 75.0
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 2.1e-08 63.9 36 72.2
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 2.1e-08 63.9 36 75.0
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 2.1e-08 63.9 36 75.0
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 2.7e-08 63.5 36 72.2
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 2.7e-08 63.5 39 66.7
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 2.7e-08 63.5 39 66.7
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 2.7e-08 63.5 39 66.7
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 2.7e-08 63.5 39 66.7
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 2.7e-08 63.5 39 66.7
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 4.6e-08 62.8 36 75.0
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 6.0e-08 62.4 36 72.2
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 6.0e-08 62.4 36 72.2
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 6.0e-08 62.4 36 75.0
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 7.9e-08 62.0 37 67.6
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 7.9e-08 62.0 36 72.2
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 7.9e-08 62.0 36 75.0
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 1.0e-07 61.6 36 72.2
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 1.0e-07 61.6 34 79.4
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 1.0e-07 61.6 35 68.6
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 1.0e-07 61.6 35 68.6
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 1.8e-07 60.8 36 69.4
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 1.8e-07 60.8 35 68.6
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 3.0e-07 60.1 37 64.9
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 3.0e-07 60.1 36 75.0
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 5.1e-07 59.3 34 73.5
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 5.1e-07 59.3 34 67.6
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 6.7e-07 58.9 35 65.7
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 6.7e-07 58.9 36 66.7
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 6.7e-07 58.9 35 65.7
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 1.5e-06 57.8 50 58.0
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 1.5e-06 57.8 35 65.7


User provided reference genes

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