Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.7e-51 205.7 100 100.0
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 5.6e-39 164.1 100 80.0
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.1e-38 162.2 100 76.0
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 1.1e-37 159.8 98 79.6
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.8e-37 159.1 98 79.6
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 6.4e-35 150.6 100 72.0
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.1e-33 145.6 100 69.0
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 4.6e-33 144.4 100 69.0
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.8e-33 143.7 100 69.0
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 7.8e-33 143.7 100 68.0
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-32 143.3 100 68.0
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-32 143.3 100 68.0
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.0e-32 143.3 100 68.0
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.0e-32 143.3 100 68.0
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.0e-32 143.3 100 68.0
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.7e-32 142.5 98 68.4
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.7e-32 142.5 100 68.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 3.0e-32 141.7 100 68.0
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 3.0e-32 141.7 100 67.0
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 3.9e-32 141.4 100 67.0
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 3.9e-32 141.4 98 66.3
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 6.6e-32 140.6 100 67.0
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 8.7e-32 140.2 100 68.0
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-31 139.8 100 67.0
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-31 139.8 100 67.0
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-31 139.8 100 67.0
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-31 139.8 100 67.0
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.1e-31 139.8 100 66.0
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.1e-31 139.8 100 68.0
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.1e-31 139.8 97 63.9
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.1e-31 139.8 99 68.7
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.5e-31 139.4 98 68.4
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 2.5e-31 138.7 100 66.0
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 5.6e-31 137.5 100 66.0
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 7.3e-31 137.1 100 66.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 9.6e-31 136.7 100 65.0
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 9.6e-31 136.7 101 66.3
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 9.6e-31 136.7 99 64.6
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.3e-30 136.3 100 67.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.6e-30 136.0 100 66.0
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.6e-30 136.0 98 67.3
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 2.1e-30 135.6 101 65.3
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.8e-30 135.2 103 63.1
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.6e-30 134.8 100 63.0
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 3.6e-30 134.8 99 64.6
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 6.2e-30 134.0 101 67.3
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 6.2e-30 134.0 100 66.0
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 8.1e-30 133.7 100 66.0
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 8.1e-30 133.7 100 66.0
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.1e-29 133.3 100 67.0
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.4e-29 132.9 103 64.1
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 2.4e-29 132.1 97 64.9
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 4.0e-29 131.3 99 63.6
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.0e-29 131.3 100 64.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 4.0e-29 131.3 100 64.0
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 6.9e-29 130.6 98 64.3
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 6.9e-29 130.6 102 63.7
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 9.0e-29 130.2 98 64.3
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.2e-28 129.8 96 65.6
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 1.2e-28 129.8 101 64.4
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.5e-28 129.4 90 70.0
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 2.6e-28 128.6 100 62.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 3.4e-28 128.3 99 64.6
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 4.4e-28 127.9 100 62.0
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 4.4e-28 127.9 95 64.2
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 4.4e-28 127.9 101 61.4
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 7.6e-28 127.1 100 59.0
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 9.9e-28 126.7 100 62.0
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 9.9e-28 126.7 97 63.9
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 9.9e-28 126.7 100 64.0
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-27 125.9 99 64.6
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 6.4e-27 124.0 93 64.5
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 6.4e-27 124.0 100 62.0
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.1e-26 123.2 100 60.0
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 2.4e-26 122.1 100 60.0
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 2.4e-26 122.1 100 60.0
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 7.1e-26 120.6 96 59.4
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 7.1e-26 120.6 91 63.7
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 1.2e-25 119.8 100 59.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.6e-25 119.4 99 61.6
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 1.3e-24 116.3 91 61.5
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 1.7e-24 115.9 102 58.8
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 3.9e-24 114.8 96 58.3
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 5.1e-24 114.4 91 62.6
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.9e-23 112.5 100 60.0
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 5.6e-23 110.9 100 57.0
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 7.3e-23 110.5 89 60.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 6.2e-22 107.5 81 61.7
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 8.1e-22 107.1 91 57.1
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 1.1e-21 106.7 79 65.8
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.4e-21 106.3 98 54.1
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.9e-21 104.0 101 58.4
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-20 102.8 75 65.3
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.6e-20 102.1 83 63.9
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 7.6e-20 100.5 83 61.4
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 7.6e-20 100.5 97 55.7
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-19 99.4 75 65.3
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 1.9e-18 95.9 75 61.3
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.2e-17 93.2 84 57.1
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 2.1e-17 92.4 82 52.4
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 6.0e-17 90.9 79 57.0
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 6.0e-17 90.9 79 57.0
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.0e-16 90.1 94 50.0
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 3.0e-16 88.6 94 50.0
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 9.6e-15 83.6 69 59.4
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 9.6e-15 83.6 63 61.9
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.6e-14 82.8 88 55.7
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 3.7e-14 81.6 85 51.8
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 6.2e-14 80.9 82 51.2
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.8e-13 79.3 76 56.6
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.4e-13 79.0 77 53.2
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 2.4e-13 79.0 73 54.8
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 3.1e-13 78.6 66 57.6
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 6.9e-13 77.4 71 54.9
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.2e-12 76.6 73 50.7
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 2.0e-12 75.9 78 53.8
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 2.0e-12 75.9 78 53.8
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.0e-12 75.9 61 62.3
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 2.0e-12 75.9 67 58.2
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.4e-12 75.1 65 56.9
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 3.4e-12 75.1 67 58.2
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.3e-11 73.2 67 53.7
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 2.9e-11 72.0 84 51.2
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 2.9e-11 72.0 82 43.9
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.8e-11 71.6 62 56.5
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 4.9e-11 71.2 70 48.6
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 6.5e-11 70.9 70 51.4
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 8.4e-11 70.5 70 47.1
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 8.4e-11 70.5 70 47.1
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 8.4e-11 70.5 67 53.7
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 8.4e-11 70.5 74 51.4
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 8.4e-11 70.5 73 56.2
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 1.4e-10 69.7 67 52.2
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.4e-10 69.7 85 47.1
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.4e-10 69.7 85 47.1
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.4e-10 69.7 108 39.8
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 1.9e-10 69.3 78 48.7
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 2.5e-10 68.9 61 52.5
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 2.5e-10 68.9 61 52.5
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 2.5e-10 68.9 69 47.8
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.2e-10 68.6 85 45.9
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 3.2e-10 68.6 80 45.0
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.2e-10 68.2 67 55.2
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.5e-10 67.8 71 49.3
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 9.3e-10 67.0 62 56.5
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 9.3e-10 67.0 67 49.3
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.2e-09 66.6 66 50.0
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.6e-09 66.2 62 51.6
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.6e-09 66.2 69 47.8
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.6e-09 64.7 71 46.5
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 6.0e-09 64.3 65 47.7
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 6.7e-08 60.8 46 63.0
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 6.7e-08 60.8 59 44.1
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 8.7e-08 60.5 67 43.3
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.5e-07 59.7 46 63.0
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.5e-07 59.7 47 63.8
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.5e-07 59.7 78 44.9
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.5e-07 58.9 68 50.0
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 2.5e-07 58.9 68 50.0
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.5e-07 58.9 68 50.0
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.5e-07 58.9 68 50.0
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 2.5e-07 58.9 68 50.0
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 2.5e-07 58.9 91 42.9
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.3e-07 58.5 97 39.2
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 3.3e-07 58.5 63 47.6
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.3e-07 58.5 61 47.5
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 4.3e-07 58.2 64 48.4
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.3e-07 58.2 59 42.4
Nn7g38002 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.3e-06 56.6 75 42.7
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 2.1e-06 55.8 72 41.7
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 3.7e-06 55.1 79 38.0
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 8.2e-06 53.9 66 43.9
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 8.2e-06 53.9 66 43.9


User provided reference genes

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