Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 8.9e-75 283.5 141 100.0
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.1e-35 153.7 97 79.4
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 2.0e-34 149.4 94 79.8
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 7.6e-34 147.5 91 81.3
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 1.3e-33 146.7 91 80.2
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.2e-32 142.1 95 73.7
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 5.5e-32 141.4 89 82.0
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 7.2e-32 141.0 96 75.0
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 9.3e-32 140.6 96 76.0
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 9.3e-32 140.6 96 75.0
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 2.1e-31 139.4 97 75.3
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 2.1e-31 139.4 90 75.6
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 6.1e-31 137.9 100 74.0
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 1.0e-30 137.1 92 78.3
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.0e-30 137.1 117 65.8
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.0e-30 137.1 117 65.8
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.0e-30 137.1 117 65.8
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 1.0e-30 137.1 99 71.7
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 1.8e-30 136.3 103 73.8
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 3.9e-30 135.2 101 68.3
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 5.1e-30 134.8 117 65.0
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.5e-29 133.3 104 70.2
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 1.9e-29 132.9 79 83.5
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 1.9e-29 132.9 93 74.2
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.5e-29 132.5 95 70.5
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 2.5e-29 132.5 79 82.3
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 3.3e-29 132.1 92 76.1
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 3.3e-29 132.1 104 69.2
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 4.3e-29 131.7 79 82.3
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 9.7e-29 130.6 96 70.8
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 9.7e-29 130.6 84 76.2
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 1.3e-28 130.2 79 81.0
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.3e-28 130.2 103 70.9
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.3e-28 130.2 103 70.9
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.2e-28 129.4 114 63.2
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 3.7e-28 128.6 75 85.3
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 6.3e-28 127.9 90 72.2
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 6.3e-28 127.9 104 71.2
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 6.3e-28 127.9 79 82.3
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 6.3e-28 127.9 85 76.5
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 8.2e-28 127.5 78 80.8
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 8.2e-28 127.5 78 80.8
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 8.2e-28 127.5 78 80.8
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 1.1e-27 127.1 99 68.7
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.1e-27 127.1 99 68.7
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 1.4e-27 126.7 87 74.7
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.4e-27 126.7 78 83.3
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 1.8e-27 126.3 86 73.3
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 2.4e-27 125.9 73 84.9
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 3.1e-27 125.6 79 79.7
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 4.1e-27 125.2 79 78.5
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.3e-27 124.8 102 68.6
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 5.3e-27 124.8 96 72.9
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 6.9e-27 124.4 91 72.5
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 9.1e-27 124.0 110 60.0
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 9.1e-27 124.0 79 78.5
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 9.1e-27 124.0 89 73.0
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 9.1e-27 124.0 96 69.8
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 9.1e-27 124.0 87 75.9
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 1.2e-26 123.6 79 81.0
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 2.0e-26 122.9 79 81.0
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 2.6e-26 122.5 89 71.9
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 3.4e-26 122.1 81 77.8
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 5.9e-26 121.3 78 78.2
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 5.9e-26 121.3 78 75.6
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 1.0e-25 120.6 97 69.1
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.0e-25 120.6 100 66.0
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 1.0e-25 120.6 80 77.5
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 1.0e-25 120.6 77 79.2
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.3e-25 120.2 90 71.1
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.3e-25 120.2 80 78.8
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.3e-25 120.2 96 67.7
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.7e-25 119.8 90 70.0
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 1.7e-25 119.8 92 70.7
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.7e-25 119.8 88 73.9
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 2.2e-25 119.4 103 61.2
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.2e-25 119.4 88 73.9
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 1.1e-24 117.1 75 80.0
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 1.4e-24 116.7 95 65.3
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 1.4e-24 116.7 101 61.4
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.9e-24 116.3 95 67.4
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 1.9e-24 116.3 84 75.0
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.5e-24 115.9 96 63.5
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 3.2e-24 115.5 96 63.5
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.2e-24 115.5 78 76.9
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 3.2e-24 115.5 73 78.1
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 4.2e-24 115.2 78 76.9
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 4.2e-24 115.2 96 63.5
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 7.2e-24 114.4 79 74.7
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 7.2e-24 114.4 90 67.8
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 7.2e-24 114.4 74 77.0
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 9.4e-24 114.0 73 76.7
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.6e-23 113.2 95 67.4
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 2.1e-23 112.8 88 70.5
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 2.7e-23 112.5 88 68.2
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 2.7e-23 112.5 72 76.4
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.6e-23 112.1 79 72.2
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 3.6e-23 112.1 73 80.8
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 4.6e-23 111.7 80 76.2
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 6.1e-23 111.3 114 57.0
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 6.1e-23 111.3 82 75.6
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 7.9e-23 110.9 79 73.4
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 7.9e-23 110.9 75 78.7
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.4e-22 110.2 79 77.2
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.4e-22 110.2 77 75.3
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.8e-22 109.8 73 79.5
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 1.8e-22 109.8 74 78.4
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.8e-22 109.8 85 70.6
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 2.3e-22 109.4 80 71.2
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.3e-22 109.4 86 69.8
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 2.3e-22 109.4 84 72.6
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 3.0e-22 109.0 93 66.7
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 3.0e-22 109.0 74 74.3
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 3.9e-22 108.6 85 68.2
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 3.9e-22 108.6 88 64.8
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 3.9e-22 108.6 73 78.1
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 5.1e-22 108.2 73 78.1
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 6.7e-22 107.8 85 68.2
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 6.7e-22 107.8 73 76.7
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.1e-21 107.1 84 71.4
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 1.5e-21 106.7 82 65.9
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 2.0e-21 106.3 86 66.3
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 2.0e-21 106.3 86 66.3
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 2.6e-21 105.9 86 66.3
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 2.6e-21 105.9 86 66.3
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 2.6e-21 105.9 73 75.3
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 5.7e-21 104.8 79 68.4
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.4e-21 104.4 107 54.2
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.4e-21 104.4 107 54.2
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 9.7e-21 104.0 85 65.9
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.3e-20 103.6 95 67.4
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 1.7e-20 103.2 81 67.9
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 2.2e-20 102.8 101 58.4
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 2.8e-20 102.4 83 69.9
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 3.7e-20 102.1 103 57.3
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 2.4e-19 99.4 90 62.2
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.5e-18 96.7 79 65.8
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 3.4e-18 95.5 85 62.4
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 1.3e-17 93.6 79 64.6
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 2.9e-17 92.4 76 63.2
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 5.0e-17 91.7 73 71.2
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.4e-16 90.1 66 74.2
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 1.4e-16 90.1 78 61.5
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.5e-16 89.4 49 91.8
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.5e-16 89.4 76 64.5
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 7.2e-16 87.8 48 91.7
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 9.4e-16 87.4 81 61.7
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.2e-15 87.0 45 97.8
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.6e-15 86.7 48 91.7
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.6e-15 86.7 48 91.7
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 4.7e-15 85.1 108 49.1
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 4.7e-15 85.1 50 86.0
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 7.9e-15 84.3 69 69.6
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 5.2e-14 81.6 76 57.9
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 9.7e-13 77.4 41 95.1
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 2.2e-12 76.3 46 78.3
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 2.4e-11 72.8 46 73.9
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 9.1e-11 70.9 48 70.8
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 8.0e-07 57.8 44 63.6
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 1.8e-06 56.6 76 44.7


User provided reference genes

Program Settings