Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 1.4e-53 212.6 102 100.0
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 3.2e-50 201.4 102 95.1
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 9.4e-50 199.9 102 91.2
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.6e-49 199.1 102 91.2
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 4.7e-49 197.6 101 93.1
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 1.0e-48 196.4 102 90.2
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.4e-48 196.1 102 89.2
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.4e-48 196.1 102 89.2
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.4e-48 196.1 102 89.2
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 1.8e-48 195.7 102 91.2
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 1.8e-48 195.7 102 91.2
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.8e-48 195.7 101 91.1
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.8e-48 195.7 101 92.1
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 3.0e-48 194.9 102 89.2
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 3.0e-48 194.9 102 89.2
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.9e-48 194.5 102 88.2
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 5.2e-48 194.1 102 90.2
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 5.2e-48 194.1 102 90.2
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 5.2e-48 194.1 102 89.2
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 6.7e-48 193.7 102 89.2
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 6.7e-48 193.7 100 90.0
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 6.7e-48 193.7 100 92.0
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.1e-47 193.0 102 89.2
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 1.5e-47 192.6 102 87.3
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 1.5e-47 192.6 102 88.2
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 1.5e-47 192.6 101 90.1
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 1.5e-47 192.6 101 90.1
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 3.3e-47 191.4 101 88.1
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 4.4e-47 191.0 111 83.8
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 5.7e-47 190.7 99 89.9
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 5.7e-47 190.7 102 88.2
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 7.4e-47 190.3 102 87.3
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 7.4e-47 190.3 100 89.0
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.3e-46 189.5 100 88.0
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 1.7e-46 189.1 102 87.3
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 2.2e-46 188.7 101 85.1
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 2.8e-46 188.3 102 88.2
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 3.7e-46 188.0 101 86.1
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 3.7e-46 188.0 102 86.3
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 4.8e-46 187.6 102 85.3
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 8.2e-46 186.8 102 85.3
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 1.4e-45 186.0 101 84.2
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 1.4e-45 186.0 100 86.0
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.8e-45 185.7 102 86.3
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.8e-45 185.7 102 86.3
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.8e-45 185.7 102 86.3
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 1.8e-45 185.7 102 84.3
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 2.4e-45 185.3 102 86.3
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 3.1e-45 184.9 102 85.3
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 5.3e-45 184.1 101 83.2
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 7.0e-45 183.7 99 85.9
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 7.0e-45 183.7 101 83.2
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 9.1e-45 183.3 101 84.2
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 9.1e-45 183.3 100 85.0
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 1.6e-44 182.6 101 84.2
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.0e-44 182.2 112 79.5
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 2.6e-44 181.8 100 85.0
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 2.6e-44 181.8 106 84.0
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 3.5e-44 181.4 101 83.2
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 5.9e-44 180.6 102 80.4
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 5.9e-44 180.6 102 84.3
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 7.7e-44 180.3 100 82.0
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 1.3e-43 179.5 100 82.0
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 1.7e-43 179.1 101 83.2
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 2.2e-43 178.7 99 85.9
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 2.2e-43 178.7 99 85.9
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 2.9e-43 178.3 101 78.2
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 2.9e-43 178.3 101 82.2
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 6.5e-43 177.2 99 79.8
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 6.5e-43 177.2 92 91.3
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 8.5e-43 176.8 100 77.0
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 8.5e-43 176.8 100 84.0
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 1.9e-42 175.6 100 82.0
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.9e-42 175.6 99 82.8
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 4.2e-42 174.5 100 76.0
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 4.2e-42 174.5 93 86.0
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 7.2e-42 173.7 101 82.2
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 7.2e-42 173.7 101 78.2
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 9.4e-42 173.3 101 75.2
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 1.2e-41 172.9 100 78.0
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 2.1e-41 172.2 94 86.2
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 2.1e-41 172.2 100 77.0
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 2.7e-41 171.8 98 76.5
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 4.7e-41 171.0 98 76.5
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 6.1e-41 170.6 99 80.8
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 1.0e-40 169.9 99 75.8
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 1.0e-40 169.9 99 75.8
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 1.0e-40 169.9 99 75.8
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 1.0e-40 169.9 99 75.8
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 1.8e-40 169.1 98 75.5
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 8.8e-40 166.8 99 74.7
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 8.8e-40 166.8 98 73.5
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 1.2e-39 166.4 92 84.8
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 1.5e-39 166.0 101 71.3
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 2.0e-39 165.6 99 72.7
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 2.6e-39 165.2 101 74.3
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 3.8e-35 151.4 101 70.3
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 3.8e-35 151.4 100 66.0
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 4.2e-34 147.9 74 97.3
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 4.2e-34 147.9 92 71.7
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 9.4e-34 146.7 70 95.7
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 6.1e-33 144.1 74 91.9
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 6.1e-33 144.1 101 63.4
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 6.1e-33 144.1 101 63.4
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 1.0e-32 143.3 74 91.9
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 1.2e-31 139.8 99 57.6
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.5e-31 139.4 72 90.3
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 3.7e-30 134.8 71 88.7
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 4.8e-30 134.4 100 55.0
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 8.3e-30 133.7 75 81.3
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 3.1e-29 131.7 81 72.8
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 4.1e-29 131.3 71 87.3
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.2e-28 129.8 74 83.8
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 4.5e-28 127.9 99 55.6
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 5.9e-28 127.5 71 81.7
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 7.7e-28 127.1 72 80.6
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 2.1e-25 119.0 69 78.3
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 4.0e-24 114.8 76 64.5
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 7.5e-23 110.5 104 57.7
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 8.3e-22 107.1 90 63.3
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 1.6e-20 102.8 90 63.3
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.4e-13 79.7 54 64.8
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 5.6e-10 67.8 66 54.5
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 7.3e-10 67.4 34 94.1
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 6.2e-09 64.3 42 71.4
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 1.1e-08 63.5 34 85.3
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 7.5e-07 57.4 31 83.9
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 8.3e-06 53.9 36 66.7


User provided reference genes

Program Settings