Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 0.0e+00 1472.6 1043 100.0
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 0.0e+00 1096.3 1067 79.2
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 4.2e-294 1015.0 1050 73.0
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 7.8e-293 1010.7 1065 76.3
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 9.0e-289 997.3 1046 73.6
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 3.2e-278 962.2 1050 72.7
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 2.5e-275 952.6 1063 73.8
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.6e-269 933.3 1063 73.4
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.9e-267 926.4 1047 68.2
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 3.1e-265 919.1 1056 69.7
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.5e-264 916.8 1056 71.7
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.2e-263 912.9 1020 70.9
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.5e-256 890.2 1052 70.9
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.5e-254 882.9 1045 70.5
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.5e-254 882.9 1045 70.5
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.0e-252 877.5 1045 70.5
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 2.3e-252 876.3 1119 66.4
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 7.4e-251 871.3 895 76.4
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 2.2e-250 869.8 1052 72.2
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.3e-250 868.2 1057 61.2
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 5.3e-249 865.1 1053 72.6
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.5e-248 863.6 1050 70.2
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 4.2e-246 855.5 1048 69.8
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 3.3e-243 845.9 1092 63.4
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 9.7e-243 844.3 1051 70.2
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.2e-242 843.2 895 75.2
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.7e-242 842.4 1056 69.1
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 4.8e-242 842.0 1021 70.6
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 2.0e-240 836.6 1052 68.8
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 1.0e-239 834.3 1059 67.9
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 2.9e-239 832.8 913 77.0
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.1e-238 830.9 893 69.4
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 7.2e-238 828.2 1057 68.9
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-236 823.9 1059 66.8
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.8e-236 823.5 1056 67.9
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 2.8e-234 816.2 918 76.0
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 5.3e-233 812.0 1044 69.1
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 9.1e-233 811.2 876 78.2
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.0e-231 807.7 1050 67.3
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 5.5e-230 802.0 1044 66.6
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 7.2e-230 801.6 919 73.7
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 9.4e-230 801.2 909 73.6
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.6e-229 799.3 915 75.1
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.0e-228 796.2 911 73.5
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.4e-227 792.7 1051 61.9
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.4e-227 792.7 1043 68.1
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 9.7e-227 791.2 878 76.7
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 2.2e-226 790.0 1057 62.3
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 3.5e-224 782.7 895 74.7
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 7.7e-224 781.6 895 76.5
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 2.2e-223 780.0 1060 66.5
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 2.9e-223 779.6 806 81.1
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.5e-222 776.5 957 71.4
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.2e-221 774.2 1045 67.6
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.2e-221 774.2 920 73.5
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.6e-221 773.9 957 71.4
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 3.6e-221 772.7 915 74.0
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.0e-219 766.9 963 69.2
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.6e-219 766.5 912 72.0
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 7.5e-219 765.0 887 75.2
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.1e-217 761.1 862 76.5
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.4e-217 760.0 818 78.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 5.9e-216 755.4 1056 62.2
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 7.7e-216 755.0 964 66.8
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 2.5e-214 750.0 925 72.1
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.3e-214 749.6 895 72.8
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 4.7e-213 745.7 903 64.5
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.8e-212 743.8 1043 63.6
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 5.2e-212 742.3 928 71.1
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.8e-212 741.9 913 70.3
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 7.5e-211 738.4 911 73.9
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.1e-209 734.6 1054 65.2
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.4e-209 734.2 1048 62.0
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 3.2e-209 733.0 1046 60.2
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 2.0e-208 730.3 1043 63.4
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 4.5e-208 729.2 947 68.6
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.3e-207 727.6 1046 60.1
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.1e-206 724.5 911 68.1
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 9.5e-206 721.5 1049 60.5
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 6.1e-205 718.8 1015 56.9
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 8.0e-205 718.4 813 73.1
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.0e-204 718.0 910 70.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 1.8e-204 717.2 966 65.4
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 2.6e-203 713.4 909 70.5
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 5.8e-203 712.2 875 70.5
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 8.3e-202 708.4 902 68.3
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.4e-201 707.6 907 68.4
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 5.4e-201 705.7 903 61.9
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 7.8e-200 701.8 895 69.3
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.7e-199 700.7 915 68.7
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 2.3e-199 700.3 1050 62.6
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 8.6e-199 698.4 922 63.2
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.5e-198 697.6 920 66.3
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.5e-198 696.8 985 63.4
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 2.5e-198 696.8 912 65.8
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 7.3e-198 695.3 911 68.9
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 7.3e-198 695.3 921 65.0
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.1e-196 691.4 1044 62.1
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.1e-196 691.4 880 66.7
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 3.1e-196 689.9 897 67.8
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 2.0e-195 687.2 912 68.9
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 4.4e-195 686.0 912 68.9
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.1e-193 681.4 919 68.2
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 4.1e-193 679.5 912 68.3
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 5.4e-193 679.1 910 68.6
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 7.1e-193 678.7 812 72.7
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 2.1e-192 677.2 812 74.9
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 5.1e-191 672.5 906 68.5
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.9e-190 670.6 917 67.0
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 3.6e-189 666.4 917 67.7
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 3.6e-189 666.4 911 68.2
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 8.9e-188 661.8 917 67.4
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.2e-186 657.1 881 66.1
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 6.4e-186 655.6 1044 61.7
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 6.4e-186 655.6 901 65.8
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 2.7e-184 650.2 910 67.5
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.5e-184 649.8 890 68.8
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.8e-181 640.2 942 56.8
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 2.7e-176 623.6 904 65.3
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 3.9e-175 619.8 913 59.6
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.5e-174 617.1 827 68.7
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 7.3e-174 615.5 793 68.6
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 2.5e-166 590.5 806 62.2
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.1e-164 585.1 825 61.9
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.4e-164 584.7 806 61.8
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.4e-164 584.7 806 61.8
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 3.1e-164 583.6 807 62.5
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 4.0e-164 583.2 834 64.7
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 6.9e-164 582.4 910 62.5
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.2e-163 581.6 741 65.7
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 8.4e-162 575.5 805 69.9
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 1.9e-161 574.3 690 79.4
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.8e-159 567.8 983 51.6
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 6.9e-156 555.8 863 63.2
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-151 541.6 689 68.5
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.8e-151 541.2 904 55.8
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 5.7e-150 536.2 902 55.3
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.8e-148 531.2 902 55.4
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 2.2e-146 524.2 806 59.9
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 6.5e-146 522.7 858 60.7
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 3.9e-143 513.5 904 54.5
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.3e-141 508.4 653 80.4
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 1.4e-137 495.0 724 63.7
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 5.5e-137 493.0 785 51.6
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.3e-135 487.6 922 52.9
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.3e-127 461.1 911 51.4
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.0e-123 448.0 925 46.8
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.1e-118 432.2 897 55.0
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.3e-117 428.7 802 53.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.4e-116 424.5 674 58.2
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.6e-110 404.4 496 70.6
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.1e-108 397.1 1000 44.8
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 8.0e-104 382.9 396 63.9
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 2.4e-100 371.3 520 48.8
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 5.4e-100 370.2 911 35.1
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.2e-99 369.0 650 71.1
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 2.1e-96 358.2 931 48.7
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.0e-94 351.7 747 50.7
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-92 345.9 1305 30.7
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.9e-85 321.2 484 47.9
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 3.7e-85 320.9 628 60.5
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 2.4e-84 318.2 652 56.4
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 4.7e-72 277.3 318 81.4
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 8.9e-71 273.1 268 67.5
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.8e-55 222.2 233 53.6
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.1e-48 198.7 296 46.3
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.8e-48 198.4 360 41.1
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.8e-47 195.7 147 70.7
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 1.9e-36 159.1 121 68.6
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.4e-31 142.9 120 65.0
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 2.9e-29 135.2 82 82.9
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 6.5e-29 134.0 88 78.4
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 9.1e-15 87.0 239 70.3
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.2e-13 82.4 194 34.5
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 6.5e-13 80.9 63 58.7
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.9e-12 79.3 66 63.6
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 4.8e-08 64.7 190 26.3
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 7.7e-06 57.4 56 51.8


User provided reference genes

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