Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p015265 Quercus lobata HOM05D000190 ORTHO05D018297 3.7e-61 238.0 120 100.0
TAR376G0267 Trochodendron aralioides HOM05D000190 ORTHO05D000113 1.1e-36 156.8 122 66.4
Glyma.04G015700 Glycine max HOM05D000190 ORTHO05D000113 2.9e-34 148.7 119 63.9
TAR628G0292 Trochodendron aralioides HOM05D000190 ORTHO05D000113 3.8e-34 148.3 123 62.6
Dinv31974 Davidia involucrata HOM05D000190 ORTHO05D000113 2.5e-33 145.6 120 64.2
Prupe.5G007700 Prunus persica HOM05D000190 ORTHO05D000113 3.2e-33 145.2 125 65.6
Phvul.009G006800 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 2.7e-32 142.1 118 62.7
Glyma.06G015700 Glycine max HOM05D000190 ORTHO05D000113 3.0e-31 138.7 119 62.2
arahy.Tifrunner.gnm1.ann1.XPJ3VE Arachis hypogaea HOM05D000190 ORTHO05D000113 2.6e-30 135.6 131 57.3
Lj1g0000686 Lotus japonicus HOM05D000190 ORTHO05D000113 3.3e-30 135.2 124 58.9
Hma1.2p1_0699F.1_g205610 Hydrangea macrophylla HOM05D000190 ORTHO05D000113 4.4e-30 134.8 122 62.3
VMungo1309G0142 Vigna mungo HOM05D000190 ORTHO05D000113 4.4e-30 134.8 120 60.8
MD06G1006000 Malus domestica HOM05D000190 ORTHO05D018297 1.8e-28 129.4 125 61.6
Manes.05G125400 Manihot esculenta HOM05D000190 ORTHO05D000113 2.4e-28 129.0 125 58.4
FAN08G3670 Fragaria x ananassa HOM05D000190 ORTHO05D000113 3.1e-28 128.6 131 61.1
Dinv40204 Davidia involucrata HOM05D000190 ORTHO05D000113 4.1e-28 128.3 124 56.5
FAN04G1758 Fragaria x ananassa HOM05D000190 ORTHO05D000113 5.3e-28 127.9 131 60.3
FvH4_5g25790 Fragaria vesca HOM05D000190 ORTHO05D000113 2.0e-27 125.9 131 59.5
FAN18G1374 Fragaria x ananassa HOM05D000190 ORTHO05D000113 2.0e-27 125.9 131 59.5
Aqoxy6G01569 Aquilegia oxysepala HOM05D000190 ORTHO05D000113 2.6e-27 125.6 122 59.0
Aqoxy6G01575 Aquilegia oxysepala HOM05D000190 ORTHO05D000113 2.6e-27 125.6 122 59.0
Actinidia15513 Actinidia chinensis HOM05D000190 ORTHO05D000113 7.7e-27 124.0 123 61.0
QL06p053252 Quercus lobata HOM05D000190 ORTHO05D018297 2.9e-26 122.1 116 57.8
TWI12G1370 Tripterygium wilfordii HOM05D000190 ORTHO05D000113 2.9e-26 122.1 124 59.7
Thecc.08G063400 Theobroma cacao HOM05D000190 ORTHO05D000113 3.8e-26 121.7 132 55.3
CSS0032204 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D000113 1.9e-25 119.4 131 58.8
RcHm_v2.0_Chr7g0216251 Rosa chinensis HOM05D000190 ORTHO05D000113 1.9e-25 119.4 130 57.7
TWI36G1745 Tripterygium wilfordii HOM05D000190 ORTHO05D000113 2.5e-25 119.0 123 58.5
CSS0017036 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D000113 5.5e-25 117.9 133 54.1
RcHm_v2.0_Chr4g0399511 Rosa chinensis HOM05D000190 ORTHO05D000113 7.2e-25 117.5 130 56.9
Medtr3g115940 Medicago truncatula HOM05D000190 ORTHO05D000113 1.2e-24 116.7 126 52.4
PSO675G8011 Papaver somniferum HOM05D000190 ORTHO05D000113 1.2e-24 116.7 130 52.3
Cfa007101 Carpinus fangiana HOM05D000190 ORTHO05D000113 3.6e-24 115.2 136 50.7
Potri.002G007000 Populus trichocarpa HOM05D000190 ORTHO05D000113 4.7e-24 114.8 133 51.9
Haze_03629 Corylus avellana HOM05D000190 ORTHO05D000113 6.1e-24 114.4 126 54.0
Ca_15396_v3 Cicer arietinum L. HOM05D000190 ORTHO05D000113 1.0e-23 113.6 127 53.5
Psat5g010400 Pisum sativum HOM05D000190 ORTHO05D000113 1.8e-23 112.8 129 51.9
ATR0807G219 Amborella trichopoda HOM05D000190 ORTHO05D018297 2.3e-23 112.5 108 55.6
Ciclev10003446m.g Citrus clementina HOM05D000190 ORTHO05D000113 4.0e-23 111.7 140 51.4
TPR.G38094 Trifolium pratense HOM05D000190 ORTHO05D018297 4.0e-23 111.7 127 52.0
Cpa.g.sc26.157 Carica papaya HOM05D000190 ORTHO05D000113 5.2e-23 111.3 124 53.2
MBI08_g48231_MAGBIO Magnolia biondii HOM05D000190 ORTHO05D000113 1.5e-22 109.8 123 54.5
Cc07_g12040 Coffea canephora HOM05D000190 ORTHO05D000113 2.0e-22 109.4 130 50.8
Cc10_g00390 Coffea canephora HOM05D000190 ORTHO05D000113 2.0e-22 109.4 128 50.8
COL.COLO4_05642 Corchorus olitorius HOM05D000190 ORTHO05D000113 4.4e-22 108.2 134 50.7
CSS0018691 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D018297 5.7e-22 107.8 109 62.4
CSS0039025 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D018297 5.7e-22 107.8 109 62.4
Manes.01G156700 Manihot esculenta HOM05D000190 ORTHO05D000113 7.5e-22 107.5 128 53.9
GSVIVG01013406001 Vitis vinifera HOM05D000190 ORTHO05D000113 7.5e-22 107.5 91 61.5
Potri.005G254300 Populus trichocarpa HOM05D000190 ORTHO05D000113 9.7e-22 107.1 105 56.2
PSO541G6544 Papaver somniferum HOM05D000190 ORTHO05D000113 1.3e-21 106.7 129 49.6
Migut.N02974 Erythranthe guttata HOM05D000190 ORTHO05D000113 2.8e-21 105.5 133 48.9
Eucgr.I02213 Eucalyptus grandis HOM05D000190 ORTHO05D000113 4.8e-21 104.8 95 60.0
SalBow6G4045 Salvia bowleyana HOM05D000190 ORTHO05D000113 1.1e-20 103.6 121 53.7
PGR119G0886 Punica granatum HOM05D000190 ORTHO05D000113 3.1e-20 102.1 141 48.2
ECA238G1592 Erigeron canadensis HOM05D000190 ORTHO05D000113 4.1e-20 101.7 100 59.0
Gohir.A01G102800 Gossypium hirsutum HOM05D000190 ORTHO05D000113 5.3e-20 101.3 130 52.3
Potri.007G064200 Populus trichocarpa HOM05D000190 ORTHO05D000113 7.0e-20 100.9 129 47.3
Haze_22840 Corylus avellana HOM05D000190 ORTHO05D000113 3.5e-19 98.6 98 60.2
HanXRQChr06g0185291 Helianthus annuus HOM05D000190 ORTHO05D000113 2.9e-18 95.5 100 56.0
Gorai.002G113800 Gossypium raimondii HOM05D000190 ORTHO05D000113 6.5e-18 94.4 132 49.2
Lsat_1_v5_gn_2_1460 Lactuca sativa HOM05D000190 ORTHO05D000113 6.5e-18 94.4 95 57.9
Gohir.D01G088100 Gossypium hirsutum HOM05D000190 ORTHO05D000113 1.1e-17 93.6 132 49.2
Duzib093G1928 Durio zibethinus HOM05D000190 ORTHO05D000113 1.6e-16 89.7 135 47.4
Lj4A810T50 Lonicera japonica HOM05D000190 ORTHO05D000113 4.7e-16 88.2 126 51.6
HanXRQChr14g0427871 Helianthus annuus HOM05D000190 ORTHO05D000113 1.0e-15 87.0 100 53.0
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 2.0e-14 82.8 70 61.4
Atru.chr3.30 Acer truncatum HOM05D000190 ORTHO05D000113 4.4e-14 81.6 83 57.8
Lj4C6T6 Lonicera japonica HOM05D000190 ORTHO05D000113 5.7e-14 81.3 121 47.1
SEGI_23004 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 2.8e-13 79.0 89 49.4
SEGI_23838 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 2.8e-13 79.0 89 51.7
Atru.chr13.89 Acer truncatum HOM05D000190 ORTHO05D000113 6.3e-13 77.8 69 60.9
DCAR_014304 Daucus carota HOM05D000190 ORTHO05D000113 1.1e-12 77.0 109 47.7
TAR626G1037 Trochodendron aralioides HOM05D000190 ORTHO05D000113 1.4e-12 76.6 45 82.2
SEGI_32757 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 2.4e-12 75.9 136 39.0
Rhsim10G0192600 Rhododendron simsii HOM05D000190 ORTHO05D000113 3.1e-12 75.5 112 42.0
Oeu017906.1 Olea europaea HOM05D000190 ORTHO05D018297 7.0e-12 74.3 115 46.1
Os03g0129100 Oryza sativa ssp. japonica HOM05D000190 ORTHO05D000113 2.0e-11 72.8 68 55.9
PGR031G3958 Punica granatum HOM05D000190 ORTHO05D000113 2.0e-11 72.8 123 45.5
TAR629G0104 Trochodendron aralioides HOM05D000190 ORTHO05D000113 7.7e-11 70.9 45 75.6
MBI08_g06889_MAGBIO Magnolia biondii HOM05D000190 ORTHO05D000113 1.0e-10 70.5 61 60.7
TAR102G0003 Trochodendron aralioides HOM05D000190 ORTHO05D000113 1.3e-10 70.1 45 77.8
TAR629G1554 Trochodendron aralioides HOM05D000190 ORTHO05D000113 1.3e-10 70.1 45 77.8
TAR636G1217 Trochodendron aralioides HOM05D000190 ORTHO05D000113 1.3e-10 70.1 45 77.8
ClCG05G020910 Citrullus lanatus HOM05D000190 ORTHO05D000113 2.3e-10 69.3 121 42.1
Phvul.002G117900 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 1.5e-09 66.6 139 38.1
SEGI_28361 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 4.2e-09 65.1 122 41.8
Zm00001eb002250 Zea mays HOM05D000190 ORTHO05D000113 4.2e-09 65.1 83 45.8
Sed0021508 Sechium edule HOM05D000190 ORTHO05D000113 5.5e-09 64.7 119 42.9
MBI14_g19546_MAGBIO Magnolia biondii HOM05D000190 ORTHO05D000113 2.8e-08 62.4 98 41.8
MELO3C012438.2 Cucumis melo HOM05D000190 ORTHO05D000113 3.6e-08 62.0 118 38.1
Glyma.16G145500 Glycine max HOM05D000190 ORTHO05D000113 6.1e-08 61.2 116 36.2
Sed0025897 Sechium edule HOM05D000190 ORTHO05D000113 6.1e-08 61.2 144 37.5
Glyma.20G178800 Glycine max HOM05D000190 ORTHO05D000113 8.0e-08 60.8 99 37.4
Lj2A1031T31 Lonicera japonica HOM05D000190 ORTHO05D000113 1.0e-07 60.5 120 37.5
Glyma.10G212300 Glycine max HOM05D000190 ORTHO05D000113 1.4e-07 60.1 99 38.4
Aa31LG1G3450 Aethionema arabicum HOM05D000190 ORTHO05D017235 1.8e-07 59.7 102 38.2
Phvul.004G071700 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 1.8e-07 59.7 104 38.5
Lj2g0014767 Lotus japonicus HOM05D000190 ORTHO05D000113 3.0e-07 58.9 94 39.4
VMungo0720G0784 Vigna mungo HOM05D000190 ORTHO05D000113 3.0e-07 58.9 99 37.4
Rhsim10G0192400 Rhododendron simsii HOM05D000190 ORTHO05D000113 4.0e-07 58.5 133 37.6
SEGI_36299 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 4.0e-07 58.5 114 32.5
CsaV3_5G036400 Cucumis sativus L. HOM05D000190 ORTHO05D000113 5.2e-07 58.2 114 36.0
Oeu012537.2 Olea europaea HOM05D000190 ORTHO05D000113 5.2e-07 58.2 133 39.8
Carub.0008s2855 Capsella rubella HOM05D000190 ORTHO05D000113 6.8e-07 57.8 135 40.0
Glyma.02G063900 Glycine max HOM05D000190 ORTHO05D000113 6.8e-07 57.8 96 38.5
Phvul.007G093600 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 6.8e-07 57.8 99 37.4
Atru.chr3.3672 Acer truncatum HOM05D000190 ORTHO05D000113 8.9e-07 57.4 103 36.9
Aa31sc130G50 Aethionema arabicum HOM05D000190 ORTHO05D000113 1.2e-06 57.0 117 31.6
Gohir.A07G172100 Gossypium hirsutum HOM05D000190 ORTHO05D000113 1.2e-06 57.0 129 37.2
Gorai.001G130800 Gossypium raimondii HOM05D000190 ORTHO05D000113 1.2e-06 57.0 112 37.5
QL06p053264 Quercus lobata HOM05D000190 ORTHO05D000113 1.2e-06 57.0 134 35.1
Rhsim10G0192200 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.2e-06 57.0 143 35.0
VMungo0464G0554 Vigna mungo HOM05D000190 ORTHO05D000113 1.2e-06 57.0 104 38.5
Actinidia22887 Actinidia chinensis HOM05D000190 ORTHO05D000113 1.5e-06 56.6 130 37.7
COL.COLO4_22567 Corchorus olitorius HOM05D000190 ORTHO05D000113 1.5e-06 56.6 133 36.8
Glyma.09G196800 Glycine max HOM05D000190 ORTHO05D000113 2.0e-06 56.2 90 41.1
ATR0807G080 Amborella trichopoda HOM05D000190 ORTHO05D000113 2.6e-06 55.8 97 38.1
Cpa.g.sc53.58 Carica papaya HOM05D000190 ORTHO05D000113 2.6e-06 55.8 113 34.5
Lj4g0007400 Lotus japonicus HOM05D000190 ORTHO05D000113 2.6e-06 55.8 118 36.4
MBI08_g29081_MAGBIO Magnolia biondii HOM05D000190 ORTHO05D000113 2.6e-06 55.8 136 36.8
Thecc.09G258400 Theobroma cacao HOM05D000190 ORTHO05D000113 2.6e-06 55.8 107 39.3
Aqoxy5G00976 Aquilegia oxysepala HOM05D000190 ORTHO05D000113 3.4e-06 55.5 142 35.2
AT1G61560 Arabidopsis thaliana HOM05D000190 ORTHO05D000113 3.4e-06 55.5 108 37.0
Medtr6g033330 Medicago truncatula HOM05D000190 ORTHO05D000113 3.4e-06 55.5 96 37.5
Atru.chr3.31 Acer truncatum HOM05D000190 ORTHO05D000113 4.4e-06 55.1 127 34.6
Aa31LG8G12180 Aethionema arabicum HOM05D000190 ORTHO05D017235 4.4e-06 55.1 113 35.4
A09p16760 Brassica napus HOM05D000190 ORTHO05D000113 4.4e-06 55.1 91 39.6
CAN.G1238.32 Capsicum annuum HOM05D000190 ORTHO05D000113 4.4e-06 55.1 138 36.2
Eucgr.A01164 Eucalyptus grandis HOM05D000190 ORTHO05D000113 4.4e-06 55.1 64 45.3
Aa31LG2G9290 Aethionema arabicum HOM05D000190 ORTHO05D000113 5.7e-06 54.7 111 36.0
BcaB04g20337 Brassica carinata HOM05D000190 ORTHO05D000113 5.7e-06 54.7 107 40.2
BcaC04g22330 Brassica carinata HOM05D000190 ORTHO05D000113 5.7e-06 54.7 91 39.6
C09p20510 Brassica napus HOM05D000190 ORTHO05D000113 5.7e-06 54.7 91 39.6
BolC9t54957H Brassica oleracea HOM05D000190 ORTHO05D000113 5.7e-06 54.7 91 39.6
CANSAT56G2283 Cannabis sativa HOM05D000190 ORTHO05D000113 5.7e-06 54.7 115 35.7
CARHR281790 Cardamine hirsuta HOM05D000190 ORTHO05D000113 5.7e-06 54.7 135 38.5
THA.LOC104827293 Tarenaya hassleriana HOM05D000190 ORTHO05D000113 5.7e-06 54.7 84 44.0
vmacro20614 Vaccinium macrocarpon HOM05D000190 ORTHO05D000113 5.7e-06 54.7 135 37.0
AL1G22390 Arabidopsis lyrata HOM05D000190 ORTHO05D000113 7.5e-06 54.3 60 46.7
Carub.0001s1092 Capsella rubella HOM05D000190 ORTHO05D000113 7.5e-06 54.3 77 40.3
Cfa015037 Carpinus fangiana HOM05D000190 ORTHO05D000113 7.5e-06 54.3 133 39.1
Glyma.02G063802 Glycine max HOM05D000190 ORTHO05D000113 7.5e-06 54.3 128 34.4
Gohir.D07G121300 Gossypium hirsutum HOM05D000190 ORTHO05D000113 7.5e-06 54.3 112 36.6
Nitab4.5_0000855g0010 Nicotiana tabacum HOM05D000190 ORTHO05D000113 7.5e-06 54.3 137 35.0
Potri.009G011900 Populus trichocarpa HOM05D000190 ORTHO05D000113 7.5e-06 54.3 112 37.5
QL08p056430 Quercus lobata HOM05D000190 ORTHO05D000113 7.5e-06 54.3 89 37.1
Rhsim05G0183800 Rhododendron simsii HOM05D000190 ORTHO05D000113 7.5e-06 54.3 99 34.3
BcaB01g03613 Brassica carinata HOM05D000190 ORTHO05D000113 9.8e-06 53.9 80 38.8
C01p38390 Brassica napus HOM05D000190 ORTHO05D000113 9.8e-06 53.9 92 42.4
Cfa007102 Carpinus fangiana HOM05D000190 ORTHO05D000113 9.8e-06 53.9 133 37.6
Duzib168G0170 Durio zibethinus HOM05D000190 ORTHO05D000113 9.8e-06 53.9 91 41.8
Glyma.16G111900 Glycine max HOM05D000190 ORTHO05D000113 9.8e-06 53.9 90 40.0
Lsat_1_v5_gn_9_68580 Lactuca sativa HOM05D000190 ORTHO05D000113 9.8e-06 53.9 116 38.8
Lj5g0009851 Lotus japonicus HOM05D000190 ORTHO05D000113 9.8e-06 53.9 99 38.4
PGSC0003DMG400013667 Solanum tuberosum HOM05D000190 ORTHO05D000113 9.8e-06 53.9 137 34.3


User provided reference genes

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