Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 9.8e-104 380.2 198 100.0
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 2.0e-88 329.3 198 83.8
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 1.7e-84 316.2 198 80.3
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 1.9e-78 296.2 198 76.3
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.2e-77 293.5 184 81.0
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.3e-76 290.0 184 79.9
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.7e-76 289.7 198 73.2
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 4.3e-75 285.0 198 72.7
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 5.6e-75 284.6 199 76.9
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 1.6e-74 283.1 198 70.7
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 2.4e-73 279.3 198 69.7
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 6.9e-73 277.7 199 75.4
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 1.5e-72 276.6 198 70.2
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 7.6e-72 274.2 198 68.7
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 4.9e-71 271.6 197 67.5
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 6.4e-71 271.2 199 72.4
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 1.1e-70 270.4 199 72.4
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.9e-70 269.6 199 71.9
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 2.4e-70 269.2 198 70.7
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.2e-69 266.9 200 68.5
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 2.7e-69 265.8 199 72.4
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.0e-68 263.8 197 66.5
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 3.0e-68 262.3 198 66.2
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 8.7e-68 260.8 198 68.2
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 1.1e-67 260.4 198 66.7
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.1e-67 260.4 184 71.7
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 1.5e-67 260.0 198 65.7
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 2.1e-66 256.1 198 66.7
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 3.7e-66 255.4 204 61.8
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 3.7e-66 255.4 198 65.2
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 3.7e-66 255.4 198 65.2
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 6.2e-66 254.6 198 66.2
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 8.1e-66 254.2 198 66.2
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 2.4e-65 252.7 199 65.3
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 1.2e-64 250.4 198 68.2
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.8e-64 248.1 198 64.6
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.6e-64 247.7 195 68.2
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 1.7e-63 246.5 199 63.3
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 2.2e-63 246.1 196 61.7
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.2e-63 246.1 204 59.8
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 2.2e-63 246.1 206 63.1
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 4.9e-63 245.0 198 63.1
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 6.5e-63 244.6 197 63.5
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.5e-63 244.6 198 64.1
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 1.9e-62 243.0 237 54.9
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 5.5e-62 241.5 198 62.6
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.1e-62 241.1 198 63.6
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 9.3e-62 240.7 198 63.1
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 2.7e-61 239.2 167 73.1
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 6.0e-61 238.0 199 64.3
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 6.0e-61 238.0 198 63.1
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 1.0e-60 237.3 199 64.8
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.3e-60 236.9 184 65.2
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.0e-60 235.7 184 66.8
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 3.9e-60 235.3 198 59.1
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.9e-60 235.3 190 66.8
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 1.1e-59 233.8 198 60.6
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 1.5e-59 233.4 199 63.8
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 2.5e-59 232.6 206 60.2
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 3.3e-59 232.3 197 58.9
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 4.3e-59 231.9 200 61.5
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 7.4e-59 231.1 196 60.7
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 7.4e-59 231.1 185 62.2
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 9.6e-59 230.7 155 73.5
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.3e-58 230.3 198 58.1
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 2.8e-58 229.2 185 61.1
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 2.8e-58 229.2 180 63.9
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 1.8e-57 226.5 196 56.1
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 2.4e-57 226.1 198 58.6
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 4.1e-57 225.3 184 64.1
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 9.0e-57 224.2 232 56.5
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 1.5e-56 223.4 197 55.8
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 1.0e-55 220.7 197 56.9
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 1.7e-55 219.9 197 55.8
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 2.9e-55 219.2 184 61.4
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 3.8e-55 218.8 163 73.0
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 8.4e-55 217.6 197 56.3
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 4.2e-54 215.3 197 54.8
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 9.3e-54 214.2 184 59.2
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 1.6e-53 213.4 197 54.3
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.6e-53 213.4 200 58.0
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 2.7e-53 212.6 197 54.8
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 4.6e-53 211.8 200 57.5
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 7.9e-53 211.1 197 53.8
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 7.9e-53 211.1 197 53.8
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 3.9e-52 208.8 197 52.8
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 8.7e-52 207.6 184 59.2
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 6.9e-49 198.0 261 45.2
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 1.9e-46 189.9 145 67.6
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 9.4e-46 187.6 184 53.3
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 5.1e-44 181.8 204 48.5
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 8.8e-44 181.0 198 48.5
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 1.1e-43 180.6 186 54.8
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 9.7e-43 177.6 162 58.0
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.3e-42 177.2 185 51.9
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 3.7e-42 175.6 194 45.9
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.8e-42 175.3 166 56.0
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 1.2e-40 170.6 145 58.6
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 1.3e-39 167.2 192 45.3
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 8.5e-39 164.5 135 61.5
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 6.7e-36 154.8 159 47.8
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 1.7e-34 150.2 146 56.2
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 2.8e-34 149.4 114 65.8
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.1e-33 147.5 187 44.9
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.1e-33 146.0 128 57.0
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 1.6e-32 143.7 145 51.7
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.5e-32 142.5 146 52.7
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 6.5e-31 138.3 115 65.2
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.5e-30 137.1 184 39.7
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.9e-30 136.7 110 57.3
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.8e-26 122.1 101 64.4
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 7.0e-25 118.2 84 69.0
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 9.1e-25 117.9 106 58.5
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 5.9e-24 115.2 87 67.8
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.7e-23 113.6 154 42.2
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 3.2e-22 109.4 190 35.3
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 2.7e-21 106.3 112 49.1
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.0e-20 104.4 100 59.0
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 5.2e-20 102.1 164 39.0
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 4.8e-18 95.5 61 72.1
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 6.5e-15 85.1 166 34.9
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 2.0e-11 73.6 59 64.4
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.4e-11 72.4 56 67.9
MCO04G502 Micromonas commoda HOM05D006640 ORTHO05D008078 7.5e-11 71.6 190 27.4
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 4.9e-10 68.9 94 44.7
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 2.4e-09 66.6 37 86.5
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 3.8e-07 59.3 45 62.2


User provided reference genes

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