Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.2e-166 589.7 292 100.0
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 1.2e-84 317.4 261 65.1
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.4e-84 315.5 261 64.4
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 5.9e-81 305.1 261 64.8
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 6.6e-56 221.9 262 51.1
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.1e-55 221.1 263 49.0
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.4e-50 202.2 264 47.3
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 8.1e-46 188.3 262 43.9
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 5.8e-44 182.2 264 43.6
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.2e-43 180.3 281 42.7
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.4e-42 177.6 265 44.9
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.2e-42 176.4 265 40.8
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 4.2e-42 176.0 262 40.8
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.0e-41 172.2 265 40.4
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.7e-40 170.6 264 41.7
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 3.9e-40 169.5 266 42.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.5e-39 167.5 290 41.4
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.5e-39 167.5 265 40.0
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.9e-39 167.2 290 39.3
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.3e-39 166.0 263 42.2
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 7.3e-39 165.2 265 43.0
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.6e-38 164.1 264 42.8
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 2.8e-38 163.3 264 41.3
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.1e-37 161.4 277 42.2
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 6.9e-37 158.7 270 40.7
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 2.9e-35 153.3 264 37.9
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 6.4e-35 152.1 293 37.9
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.4e-34 151.0 264 37.9
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 7.1e-34 148.7 266 39.1
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 2.1e-33 147.1 279 35.8
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.1e-33 147.1 275 38.2
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 2.7e-33 146.7 263 37.6
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.5e-33 146.4 263 37.6
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 6.0e-33 145.6 263 37.6
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.0e-32 144.8 268 40.3
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.8e-32 144.1 263 38.0
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.9e-32 142.9 263 37.6
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.1e-31 141.4 263 38.4
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 5.6e-31 139.0 270 37.4
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 5.6e-31 139.0 263 39.2
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 9.6e-31 138.3 265 38.1
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.6e-30 137.5 241 41.9
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 3.7e-30 136.3 263 36.9
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.8e-30 136.0 263 38.0
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 6.2e-30 135.6 284 35.9
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 6.2e-30 135.6 260 39.6
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.4e-29 134.4 259 37.8
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.4e-29 134.4 255 38.0
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-29 133.3 253 39.9
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 4.0e-29 132.9 263 38.0
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.5e-28 131.0 250 40.4
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.6e-28 130.2 263 35.4
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 9.9e-28 128.3 260 35.8
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.3e-27 127.9 265 37.0
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.7e-27 127.5 244 39.3
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.9e-27 126.7 263 36.9
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.8e-27 126.3 263 38.0
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.9e-27 125.9 267 38.2
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 8.4e-27 125.2 251 37.8
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 8.4e-27 125.2 260 35.4
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.1e-26 124.8 291 35.4
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.4e-26 124.4 268 36.9
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.4e-26 124.4 262 35.9
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.9e-26 124.0 264 34.1
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.6e-25 120.9 247 39.3
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.1e-25 120.6 247 38.1
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.1e-25 120.6 247 38.1
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.7e-25 120.2 261 36.8
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.5e-25 119.8 282 34.4
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 4.6e-25 119.4 266 35.0
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 7.9e-25 118.6 248 37.1
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.3e-24 117.9 242 38.8
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.3e-24 117.9 254 36.2
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.3e-24 117.9 256 37.5
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.8e-24 117.5 261 36.8
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.3e-24 117.1 263 36.5
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 3.0e-24 116.7 268 33.6
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 5.1e-24 115.9 284 35.6
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 8.7e-24 115.2 266 33.8
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.9e-23 114.0 246 37.0
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.5e-23 113.6 146 47.3
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.4e-23 112.1 253 37.9
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 9.6e-23 111.7 265 37.0
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.1e-22 110.5 209 40.2
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 3.7e-22 109.8 285 34.7
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 4.8e-22 109.4 230 36.1
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 8.2e-22 108.6 268 34.7
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 8.2e-22 108.6 265 35.5
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 2.4e-21 107.1 282 34.4
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.0e-20 104.0 234 35.5
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 5.8e-20 102.4 260 32.3
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.0e-19 101.7 264 32.6
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.2e-19 100.5 256 33.6
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 3.8e-19 99.8 263 31.6
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.5e-19 99.0 88 60.2
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.1e-18 98.2 241 32.8
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-18 97.8 207 37.7
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 4.2e-18 96.3 253 34.0
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.7e-17 93.6 253 32.0
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.7e-17 93.6 119 49.6
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.6e-17 92.8 287 29.3
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 7.9e-17 92.0 256 31.6
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.0e-16 91.7 240 31.2
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.0e-16 91.7 271 33.6
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 2.3e-16 90.5 262 29.8
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 6.7e-16 89.0 266 30.8
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 8.7e-16 88.6 263 30.4
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.9e-15 87.4 264 31.8
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.5e-15 87.0 265 30.2
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 4.3e-15 86.3 293 29.7
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.8e-14 83.6 256 32.0
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.1e-13 80.1 283 29.7
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 5.3e-13 79.3 255 30.2
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 5.3e-13 79.3 283 29.7
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 5.3e-13 79.3 90 50.0
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 6.9e-13 79.0 248 31.0
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 1.2e-12 78.2 267 32.6
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.5e-12 77.8 255 30.6
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.9e-12 75.9 115 45.2
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.7e-11 74.3 116 43.1
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.7e-11 74.3 116 43.1
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.2e-11 73.9 263 28.9
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 2.2e-11 73.9 116 43.1
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.2e-11 73.9 116 42.2
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 3.8e-11 73.2 116 43.1
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 8.5e-11 72.0 143 37.1
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.5e-10 70.5 113 39.8
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 7.2e-10 68.9 225 31.1
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 2.1e-09 67.4 240 28.8
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 2.7e-09 67.0 120 35.0
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 1.3e-08 64.7 180 28.9
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.3e-08 63.9 51 60.8
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 5.1e-08 62.8 87 44.8
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 6.7e-08 62.4 82 42.7
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.7e-08 62.4 122 38.5
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.1e-07 61.6 52 59.6
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.5e-07 60.5 216 29.2
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 5.7e-07 59.3 129 35.7
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 9.7e-07 58.5 76 44.7
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 2.2e-06 57.4 76 43.4
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.7e-06 56.6 76 43.4
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 3.7e-06 56.6 66 51.5
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 6.3e-06 55.8 76 43.4
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 6.3e-06 55.8 76 44.7


User provided reference genes

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