Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1662.5 803 100.0
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1443.7 804 85.8
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1377.8 804 83.5
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1357.4 886 76.4
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1355.9 804 80.0
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1321.2 804 77.6
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1317.0 800 77.9
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1313.5 805 78.6
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1306.2 804 77.5
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1302.3 804 76.7
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1295.0 803 76.5
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1293.5 805 77.8
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1286.6 839 73.9
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1284.6 805 76.4
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1281.9 803 76.2
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1280.0 805 76.0
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1275.8 805 76.0
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1268.4 806 75.3
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1255.0 820 73.5
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1252.3 817 74.3
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1248.4 802 74.6
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1248.0 805 74.0
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1246.9 805 74.2
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1243.0 805 74.3
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1242.3 804 74.6
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1241.1 812 74.6
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1240.3 834 72.2
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1236.9 804 72.9
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1231.9 804 73.9
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1231.5 839 70.3
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1224.9 804 73.8
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1218.8 804 72.1
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1216.8 804 73.1
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1205.7 800 71.4
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1205.3 801 72.0
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1203.7 803 72.0
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1196.8 802 70.3
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1196.8 804 70.1
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1196.4 805 72.8
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1194.1 803 69.6
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1193.3 801 70.8
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1186.8 804 70.6
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1186.0 775 72.6
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1179.1 809 71.0
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1179.1 809 71.0
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1179.1 803 71.4
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1177.5 807 69.3
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1170.2 757 73.7
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1170.2 800 69.6
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1166.0 804 70.1
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1165.6 804 70.3
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1163.7 804 69.4
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1161.0 853 66.9
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1159.8 805 68.8
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1158.3 804 69.8
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1157.9 807 68.8
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1156.4 804 69.3
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1154.8 808 68.2
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1152.9 805 69.8
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1147.9 811 67.1
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1147.1 806 69.5
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1142.9 846 64.7
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1142.5 837 65.9
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1137.5 803 68.2
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1135.2 800 68.4
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 0.0e+00 1134.0 804 67.7
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1130.9 804 67.0
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 0.0e+00 1129.8 802 66.2
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1125.9 803 67.0
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1121.3 807 67.4
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1121.3 801 67.3
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1107.4 801 67.5
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1107.4 801 67.7
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 0.0e+00 1105.1 804 65.9
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 0.0e+00 1103.6 804 65.7
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 0.0e+00 1086.6 844 64.1
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 0.0e+00 1083.6 852 63.6
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 1.6e-311 1072.4 788 65.5
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 2.2e-311 1072.0 804 66.3
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 1.6e-309 1065.8 718 72.6
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 7.6e-304 1047.0 804 61.8
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 8.4e-303 1043.5 803 64.3
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 5.4e-302 1040.8 802 61.0
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 2.7e-301 1038.5 807 62.1
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 2.1e-298 1028.9 803 63.9
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 1.7e-295 1019.2 733 68.3
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 2.0e-288 995.7 712 69.5
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 6.9e-273 944.1 604 75.3
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.5e-259 899.8 613 73.2
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 2.6e-259 899.0 596 73.0
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.6e-251 872.5 803 54.8
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 8.3e-234 814.3 613 62.5
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 1.2e-229 800.4 600 66.0
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 1.3e-218 763.8 833 47.9
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 5.1e-207 725.3 834 47.0
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 2.5e-198 696.4 827 43.9
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.8e-180 637.1 530 58.5
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 3.4e-179 632.9 457 66.7
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 7.6e-179 631.7 454 68.5
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 7.9e-152 542.0 372 72.8
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 1.1e-150 538.1 582 46.9
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 2.7e-144 516.9 458 55.0
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 5.7e-142 509.2 413 64.9
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 2.7e-136 490.3 340 76.5
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 3.0e-135 486.9 446 53.4
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 5.7e-134 482.6 313 70.6
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 7.7e-131 472.2 468 52.4
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 4.7e-96 356.7 193 79.8
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.8e-87 328.2 306 59.5
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 2.9e-85 320.9 237 70.5
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.4e-76 291.2 260 55.0
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 1.3e-72 278.9 487 37.4
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 1.4e-71 275.4 146 81.5
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 2.6e-70 271.2 148 81.1
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 1.8e-55 221.9 122 72.1
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 8.4e-53 213.0 195 49.7
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 7.4e-49 199.9 145 57.9
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 4.8e-48 197.2 864 25.7
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.5e-46 190.7 198 53.0
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.7e-40 171.0 93 75.3
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 1.7e-32 145.6 101 65.3
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 3.1e-23 114.8 53 84.9
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.5e-20 105.9 195 34.9
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 7.5e-17 93.6 80 53.8
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 9.8e-09 66.6 52 57.7
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 1.3e-08 66.2 155 30.3
TWI23G0153 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 1.7e-08 65.9 159 29.6
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 6.3e-08 63.9 123 35.8
Os06g0251200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 8.3e-08 63.5 171 29.8
PSO063G2838 Papaver somniferum HOM05D000563 ORTHO05D000536 1.1e-07 63.2 230 28.7
PSO339G0932 Papaver somniferum HOM05D000563 ORTHO05D000536 1.1e-07 63.2 154 29.9
A03p31920 Brassica napus HOM05D001597 ORTHO05D001512 1.4e-07 62.8 244 27.9
BraA03t12364Z Brassica rapa HOM05D001597 ORTHO05D001512 1.4e-07 62.8 222 27.9
DCAR_002756 Daucus carota HOM05D000563 ORTHO05D000536 2.4e-07 62.0 155 28.4
Migut.F00745 Erythranthe guttata HOM05D000563 ORTHO05D000536 2.4e-07 62.0 148 31.8
MCO09G352 Micromonas commoda HOM05D006313 ORTHO05D007853 2.4e-07 62.0 181 28.2
Zm00001eb174850 Zea mays HOM05D000563 ORTHO05D000536 4.1e-07 61.2 149 29.5
PSO384G4100 Papaver somniferum HOM05D000563 ORTHO05D000536 5.4e-07 60.8 154 29.2
Os08g0523700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.1e-07 60.1 145 26.9
Pp3c12_280 Physcomitrium patens HOM05D000563 ORTHO05D000536 9.1e-07 60.1 149 31.5
ECA236G1975 Erigeron canadensis HOM05D000563 ORTHO05D000536 1.2e-06 59.7 162 29.6
Eucgr.K03404 Eucalyptus grandis HOM05D000563 ORTHO05D000536 1.2e-06 59.7 155 31.0
SGA_v2.0_scaffold2G01048 Striga asiatica HOM05D000563 ORTHO05D000536 1.2e-06 59.7 148 31.8
BolC3t16166H Brassica oleracea HOM05D001597 ORTHO05D001512 1.6e-06 59.3 244 26.6
Glyma.19G153400 Glycine max HOM05D000563 ORTHO05D000536 1.6e-06 59.3 192 30.2
PSO782G4446 Papaver somniferum HOM05D000563 ORTHO05D000536 2.0e-06 58.9 141 32.6
Migut.D00259 Erythranthe guttata HOM05D000563 ORTHO05D000536 2.7e-06 58.5 155 29.7
Gohir.D08G203300 Gossypium hirsutum HOM05D000563 ORTHO05D000536 2.7e-06 58.5 170 28.2
Gorai.004G215300 Gossypium raimondii HOM05D000563 ORTHO05D000536 2.7e-06 58.5 170 28.2
Atru.chr5.607 Acer truncatum HOM05D001597 ORTHO05D001512 3.5e-06 58.2 225 26.2
HanXRQChr16g0523421 Helianthus annuus HOM05D001597 ORTHO05D001512 3.5e-06 58.2 287 25.4
Hma1.2p1_0026F.1_g016300 Hydrangea macrophylla HOM05D000563 ORTHO05D000536 3.5e-06 58.2 163 31.3
Nn2g11235 Nelumbo nucifera HOM05D000563 ORTHO05D000536 4.5e-06 57.8 149 32.2
PSO170G4851 Papaver somniferum HOM05D000563 ORTHO05D000536 4.5e-06 57.8 157 28.0
Psat2g023120 Pisum sativum HOM05D000563 ORTHO05D000536 4.5e-06 57.8 136 31.6
SGA_v2.0_scaffold221G42703 Striga asiatica HOM05D000563 ORTHO05D000536 4.5e-06 57.8 148 32.4
HPP92_020334 Vanilla planifolia HOM05D000563 ORTHO05D000536 4.5e-06 57.8 129 31.8
BcaC01g06849 Brassica carinata HOM05D001597 ORTHO05D001512 5.9e-06 57.4 244 26.6
C03p38940 Brassica napus HOM05D001597 ORTHO05D001512 5.9e-06 57.4 244 26.6
Os08g0523200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.9e-06 57.4 154 29.2
PSO724G1239 Papaver somniferum HOM05D000563 ORTHO05D000536 5.9e-06 57.4 133 32.3
Pp3c17_930 Physcomitrium patens HOM05D000563 ORTHO05D000536 5.9e-06 57.4 126 33.3
Pp3c17_931 Physcomitrium patens HOM05D000563 ORTHO05D000536 5.9e-06 57.4 126 33.3
MSTRG.8986 Avicennia marina HOM05D000563 ORTHO05D000536 7.7e-06 57.0 148 31.8
AUR62001599 Chenopodium quinoa HOM05D000563 ORTHO05D000536 7.7e-06 57.0 165 27.3
DCAR_024880 Daucus carota HOM05D000563 ORTHO05D000536 7.7e-06 57.0 130 31.5
ECA234G3782 Erigeron canadensis HOM05D002322 ORTHO05D002536 7.7e-06 57.0 117 29.1
Gohir.A08G185200 Gossypium hirsutum HOM05D000563 ORTHO05D000536 7.7e-06 57.0 170 27.6
Nitab4.5_0004074g0030 Nicotiana tabacum HOM05D000563 ORTHO05D000536 7.7e-06 57.0 107 35.5
PSO063G6659 Papaver somniferum HOM05D000563 ORTHO05D000536 7.7e-06 57.0 164 29.3


User provided reference genes

Program Settings