Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.6e-252 875.5 429 100.0
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 3.1e-203 711.8 424 83.3
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.8e-201 704.9 427 80.1
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 2.7e-199 698.7 425 78.8
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.1e-197 693.3 426 78.9
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 2.8e-196 688.7 388 85.3
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 2.8e-196 688.7 427 77.5
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.8e-195 686.0 430 78.8
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 3.4e-194 681.8 427 75.6
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 7.6e-194 680.6 429 77.2
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 7.1e-192 674.1 425 76.9
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 6.0e-191 671.0 423 77.8
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 3.0e-190 668.7 429 75.8
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 5.1e-190 667.9 422 77.0
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 6.7e-190 667.5 433 76.4
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.5e-189 666.4 426 77.5
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 3.3e-189 665.2 426 73.7
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 3.3e-189 665.2 424 75.7
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 4.3e-189 664.8 429 73.7
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 7.4e-189 664.1 423 76.1
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 7.4e-189 664.1 425 75.1
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 7.4e-189 664.1 427 74.9
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 9.7e-189 663.7 423 77.1
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.6e-188 662.9 425 75.1
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.6e-188 662.9 438 74.7
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 6.3e-188 661.0 436 74.1
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 2.4e-187 659.1 419 74.5
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 6.9e-187 657.5 426 74.6
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 6.9e-187 657.5 423 75.7
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 6.9e-187 657.5 423 75.7
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.0e-186 656.0 425 74.6
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.0e-186 656.0 423 75.4
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.5e-186 654.8 423 75.4
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.7e-185 652.9 417 76.0
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 2.9e-185 652.1 427 74.9
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 6.5e-185 651.0 411 76.4
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.1e-184 650.2 439 72.7
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 3.2e-184 648.7 410 75.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 5.5e-184 647.9 428 73.8
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.7e-183 645.6 423 74.0
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 6.1e-183 644.4 430 73.0
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.0e-182 642.1 429 73.0
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.5e-181 639.8 434 73.7
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 4.3e-181 638.3 427 71.4
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 5.7e-181 637.9 433 71.6
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 5.7e-181 637.9 426 74.4
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 7.4e-181 637.5 414 75.4
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 7.4e-181 637.5 425 73.2
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.1e-179 633.6 425 72.7
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 3.1e-179 632.1 426 72.8
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 6.9e-179 630.9 474 66.5
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 3.4e-178 628.6 423 72.3
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.0e-177 627.1 403 74.7
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 1.7e-177 626.3 424 73.6
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 3.8e-177 625.2 400 73.8
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.1e-176 623.6 419 72.1
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 1.4e-176 623.2 419 72.1
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 1.4e-176 623.2 419 72.1
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.4e-176 623.2 411 73.0
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 1.4e-176 623.2 411 73.0
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.9e-176 622.9 419 72.1
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 5.5e-176 621.3 426 70.9
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 7.2e-176 620.9 411 72.5
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 2.1e-175 619.4 426 70.2
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 2.1e-175 619.4 423 72.1
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 6.1e-175 617.8 424 72.2
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 7.9e-175 617.5 395 74.4
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.0e-174 617.1 424 71.7
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 3.9e-174 615.1 401 73.6
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 5.1e-174 614.8 437 70.7
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 5.1e-174 614.8 437 70.7
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 6.7e-174 614.4 429 69.9
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 6.7e-174 614.4 427 69.3
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 2.2e-172 609.4 423 71.6
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 1.1e-171 607.1 397 73.6
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 5.3e-171 604.7 392 76.0
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 5.3e-171 604.7 411 70.6
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 9.1e-171 604.0 432 67.4
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 4.5e-170 601.7 404 72.3
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.0e-169 600.5 430 68.1
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 1.3e-169 600.1 438 67.6
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 1.7e-169 599.7 431 68.7
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.7e-169 599.7 460 65.9
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 7.2e-168 594.3 416 70.2
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 6.1e-167 591.3 391 71.9
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 6.7e-166 587.8 419 68.3
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 3.3e-165 585.5 388 72.2
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 5.7e-165 584.7 395 71.9
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.7e-164 583.2 449 64.6
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 8.5e-161 570.9 422 67.3
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.9e-160 569.7 377 72.1
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 1.9e-160 569.7 385 71.7
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 6.1e-159 564.7 338 77.8
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 6.7e-158 561.2 376 72.3
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.0e-157 559.7 377 72.7
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.3e-156 557.0 425 67.1
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 2.2e-156 556.2 425 64.2
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.0e-150 537.3 418 62.0
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.2e-149 533.9 343 75.5
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 3.7e-148 528.9 335 75.5
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.6e-146 523.5 401 64.6
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 2.9e-145 519.2 385 64.4
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 2.8e-143 512.7 413 61.7
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.1e-139 498.8 301 77.1
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.2e-138 497.3 396 59.8
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.0e-137 494.2 305 75.7
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 5.0e-137 491.9 388 62.6
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 1.5e-136 490.3 414 59.4
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 5.6e-136 488.4 398 60.1
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.6e-133 479.6 341 66.9
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 5.8e-133 478.4 450 55.1
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 6.4e-132 474.9 341 66.0
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.1e-131 474.2 341 66.3
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.9e-124 449.5 282 77.7
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 2.9e-116 422.9 273 76.2
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 3.9e-113 412.5 272 72.4
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 5.6e-104 382.1 353 52.7
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 3.6e-103 379.4 304 58.6
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.0e-93 347.1 207 75.4
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 2.9e-92 343.2 405 44.7
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.4e-91 340.1 277 58.1
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.2e-82 311.2 224 69.2
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 2.3e-73 280.4 314 45.5
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 3.0e-73 280.0 229 61.6
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.9e-72 277.3 201 65.2
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.1e-67 261.5 231 53.2
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.4e-67 261.2 229 56.8
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 2.1e-66 257.3 179 69.3
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.1e-59 235.0 145 77.2
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 3.5e-53 213.4 160 69.4
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.6e-45 187.2 123 66.7
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 4.2e-43 179.9 134 59.7
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 1.2e-37 161.8 150 58.7
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 2.2e-36 157.5 134 51.5
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 4.7e-34 149.8 156 55.1
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 1.2e-29 135.2 75 76.0
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 8.6e-28 129.0 122 51.6
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 4.2e-27 126.7 391 26.6
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 6.8e-25 119.4 295 28.8
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 5.4e-22 109.8 93 60.2
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.7e-20 104.8 63 69.8
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 2.0e-16 91.3 52 75.0
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 3.4e-16 90.5 58 72.4
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.1e-11 75.5 65 56.9
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 1.5e-08 65.1 78 41.0
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 1.5e-08 65.1 78 41.0


User provided reference genes

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