Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p011928 Quercus lobata HOM05D006069 ORTHO05D008101 1.9e-53 212.2 106 100.0
QL11p034297 Quercus lobata HOM05D006069 ORTHO05D008101 1.9e-53 212.2 106 100.0
Cfa013967 Carpinus fangiana HOM05D006069 ORTHO05D008101 1.2e-44 183.0 108 88.9
Haze_22649 Corylus avellana HOM05D006069 ORTHO05D008101 2.8e-44 181.8 108 88.0
Haze_22650 Corylus avellana HOM05D003905 ORTHO05D005329 2.8e-44 181.8 108 88.0
Thecc.08G047500 Theobroma cacao HOM05D006069 ORTHO05D008101 5.2e-43 177.6 111 80.2
Cfa013969 Carpinus fangiana HOM05D006069 ORTHO05D008101 2.6e-42 175.3 106 86.8
CiPaw.07G148400 Carya illinoinensis HOM05D006069 ORTHO05D008101 4.4e-42 174.5 106 82.1
COL.COLO4_26120 Corchorus olitorius HOM05D006069 ORTHO05D008101 1.7e-41 172.6 112 76.8
Duzib041G0459 Durio zibethinus HOM05D006069 ORTHO05D008101 1.7e-41 172.6 111 76.6
Duzib093G2212 Durio zibethinus HOM05D006069 ORTHO05D008101 2.4e-40 168.7 111 76.6
Ciclev10002907m.g Citrus clementina HOM05D006069 ORTHO05D008101 4.1e-40 167.9 109 75.2
Cpa.g.sc64.165 Carica papaya HOM05D006069 ORTHO05D008101 3.5e-39 164.9 106 74.5
Cpa.g.c46170 Carica papaya HOM05D006069 ORTHO05D008101 5.9e-39 164.1 106 74.5
Gohir.D05G258200 Gossypium hirsutum HOM05D006069 ORTHO05D008101 5.9e-39 164.1 111 73.9
Gorai.009G269500 Gossypium raimondii HOM05D006069 ORTHO05D008101 5.9e-39 164.1 111 73.9
Gohir.A05G256400 Gossypium hirsutum HOM05D006069 ORTHO05D008101 1.7e-38 162.5 111 73.0
Sabra02G0016400 Salix brachista HOM05D006069 ORTHO05D008101 2.3e-38 162.2 101 83.2
TWI12G0868 Tripterygium wilfordii HOM05D006069 ORTHO05D008101 3.8e-38 161.4 106 74.5
TWI56G0900 Tripterygium wilfordii HOM05D006069 ORTHO05D008101 8.6e-38 160.2 106 73.6
Potri.005G241200 Populus trichocarpa HOM05D006069 ORTHO05D008101 1.1e-37 159.8 101 80.2
Potri.002G020200 Populus trichocarpa HOM05D006069 ORTHO05D008101 1.5e-37 159.5 103 80.6
Atru.chr13.270 Acer truncatum HOM05D006069 ORTHO05D008101 1.9e-37 159.1 111 71.2
Sabra05G0186700 Salix brachista HOM05D006069 ORTHO05D008101 2.8e-36 155.2 101 79.2
Gohir.D06G005300 Gossypium hirsutum HOM05D006069 ORTHO05D008101 4.7e-36 154.5 113 70.8
Gorai.010G002500 Gossypium raimondii HOM05D006069 ORTHO05D008101 4.7e-36 154.5 113 70.8
Oeu061972.1 Olea europaea HOM05D006069 ORTHO05D008101 6.1e-36 154.1 100 72.0
PGR031G1000 Punica granatum HOM05D006069 ORTHO05D008101 8.0e-36 153.7 100 75.0
Gohir.A06G002300 Gossypium hirsutum HOM05D006069 ORTHO05D008101 1.8e-35 152.5 113 69.0
Oeu014170.1 Olea europaea HOM05D006069 ORTHO05D008101 5.2e-35 151.0 100 73.0
Manes.18G012400 Manihot esculenta HOM05D006069 ORTHO05D008101 1.2e-34 149.8 101 75.2
RcHm_v2.0_Chr6g0303091 Rosa chinensis HOM05D006069 ORTHO05D008101 1.2e-34 149.8 112 71.4
VMungo0647G0980 Vigna mungo HOM05D006069 ORTHO05D008101 1.2e-34 149.8 115 67.8
Eucgr.H00971 Eucalyptus grandis HOM05D006069 ORTHO05D008101 4.4e-34 147.9 105 73.3
Prupe.1G363800 Prunus persica HOM05D006069 ORTHO05D008101 4.4e-34 147.9 108 69.4
FAN15G3329 Fragaria x ananassa HOM05D006069 ORTHO05D008101 5.7e-34 147.5 109 72.5
arahy.Tifrunner.gnm1.ann1.LEZM1J Arachis hypogaea HOM05D006069 ORTHO05D008101 1.3e-33 146.4 112 68.8
Glyma.14G219800 Glycine max HOM05D006069 ORTHO05D008101 1.3e-33 146.4 113 66.4
Phvul.001G005300 Phaseolus vulgaris HOM05D006069 ORTHO05D008101 1.3e-33 146.4 115 66.1
TAR625G1525 Trochodendron aralioides HOM05D006069 ORTHO05D008101 1.7e-33 146.0 100 69.0
Sc02g0008640 Simmondsia chinensis HOM05D006069 ORTHO05D008101 2.9e-33 145.2 106 70.8
FvH4_2g38290 Fragaria vesca HOM05D006069 ORTHO05D008101 3.7e-33 144.8 109 70.6
Duzib116G0547 Durio zibethinus HOM05D006069 ORTHO05D008101 1.1e-32 143.3 97 74.2
FAN27G3260 Fragaria x ananassa HOM05D006069 ORTHO05D008101 1.1e-32 143.3 109 70.6
Aa31LG4G6010 Aethionema arabicum HOM05D006069 ORTHO05D008101 2.4e-32 142.1 117 64.1
Hma1.2p1_0733F.1_g210300 Hydrangea macrophylla HOM05D006069 ORTHO05D008101 4.1e-32 141.4 103 68.9
Sp5g30930 Schrenkiella parvula HOM05D006069 ORTHO05D008101 4.1e-32 141.4 118 64.4
MD08G1011100 Malus domestica HOM05D006069 ORTHO05D008101 7.0e-32 140.6 109 69.7
Oeu054481.1 Olea europaea HOM05D006069 ORTHO05D008101 1.2e-31 139.8 101 72.3
AT1G75810 Arabidopsis thaliana HOM05D006069 ORTHO05D008101 1.6e-31 139.4 120 62.5
Dinv31861 Davidia involucrata HOM05D006069 ORTHO05D000038 1.6e-31 139.4 103 67.0
AL2G35800 Arabidopsis lyrata HOM05D006069 ORTHO05D008101 2.0e-31 139.0 120 62.5
SalBow7G4587 Salvia bowleyana HOM05D006069 ORTHO05D008101 2.0e-31 139.0 104 66.3
Manes.05G145900 Manihot esculenta HOM05D006069 ORTHO05D008101 2.7e-31 138.7 94 73.4
Thhalv10019558m.g Eutrema salsugineum HOM05D006069 ORTHO05D008101 3.5e-31 138.3 118 63.6
Nn6g32021 Nelumbo nucifera HOM05D006069 ORTHO05D008101 5.9e-31 137.5 110 63.6
Nitab4.5_0000934g0080 Nicotiana tabacum HOM05D006069 ORTHO05D008101 5.9e-31 137.5 124 58.9
BraA02t07058Z Brassica rapa HOM05D006069 ORTHO05D008101 7.8e-31 137.1 120 61.7
BcaC03g15627 Brassica carinata HOM05D006069 ORTHO05D008101 1.0e-30 136.7 120 60.8
C02p33660 Brassica napus HOM05D006069 ORTHO05D008101 1.0e-30 136.7 120 60.8
BolC2t09338H Brassica oleracea HOM05D006069 ORTHO05D008101 1.0e-30 136.7 120 60.8
BcaB05g24944 Brassica carinata HOM05D006069 ORTHO05D008101 1.7e-30 136.0 123 60.2
CANSAT25G1864 Cannabis sativa HOM05D006069 ORTHO05D008101 3.0e-30 135.2 108 68.5
SalBow8G0098 Salvia bowleyana HOM05D006069 ORTHO05D008101 3.0e-30 135.2 104 65.4
Medtr3g113620 Medicago truncatula HOM05D006069 ORTHO05D008101 3.9e-30 134.8 102 68.6
A02p20240 Brassica napus HOM05D006069 ORTHO05D008101 5.0e-30 134.4 120 60.8
Lalb_Chr19g0131451 Lupinus albus HOM05D006069 ORTHO05D008101 5.0e-30 134.4 108 65.7
Ca_00837_v3 Cicer arietinum L. HOM05D006069 ORTHO05D008101 6.6e-30 134.0 103 65.0
EL10Ac1g02174 Beta vulgaris HOM05D006069 ORTHO05D008101 8.6e-30 133.7 106 66.0
Lalb_Chr01g0008621 Lupinus albus HOM05D006069 ORTHO05D008101 1.1e-29 133.3 113 61.9
THA.LOC104805018 Tarenaya hassleriana HOM05D006069 ORTHO05D008101 1.5e-29 132.9 114 61.4
SGA_v2.0_scaffold11G05937 Striga asiatica HOM05D006069 ORTHO05D008101 3.3e-29 131.7 101 64.4
CSS0019530 Camellia sinensis var. sinensis HOM05D006069 ORTHO05D008101 4.3e-29 131.3 104 62.5
Carub.0002s2266 Capsella rubella HOM05D006069 ORTHO05D008101 4.3e-29 131.3 121 58.7
CARHR069230 Cardamine hirsuta HOM05D006069 ORTHO05D008101 5.6e-29 131.0 118 58.5
Sc15g0004900 Simmondsia chinensis HOM05D006069 ORTHO05D008101 7.3e-29 130.6 102 66.7
VMungo1309G1320 Vigna mungo HOM05D006069 ORTHO05D008101 9.5e-29 130.2 108 58.3
MD15G1011100 Malus domestica HOM05D006069 ORTHO05D008101 1.2e-28 129.8 108 65.7
Lsat_1_v5_gn_8_29900 Lactuca sativa HOM05D006069 ORTHO05D008101 2.8e-28 128.6 105 64.8
Migut.N03168 Erythranthe guttata HOM05D006069 ORTHO05D008101 3.6e-28 128.3 100 63.0
unitig_82.g27107 Utricularia gibba HOM05D006069 ORTHO05D008101 3.6e-28 128.3 100 65.0
BcaC08g47069 Brassica carinata HOM05D006069 ORTHO05D008101 6.2e-28 127.5 118 56.8
Lalb_Chr03g0033431 Lupinus albus HOM05D006069 ORTHO05D008101 6.2e-28 127.5 109 61.5
Solyc04g078060.1 Solanum lycopersicum HOM05D006069 ORTHO05D008101 6.2e-28 127.5 115 58.3
HanXRQChr13g0387231 Helianthus annuus HOM05D006069 ORTHO05D008101 8.0e-28 127.1 105 64.8
Sopen04g031650 Solanum pennellii HOM05D006069 ORTHO05D008101 8.0e-28 127.1 115 58.3
PGSC0003DMG400021511 Solanum tuberosum HOM05D006069 ORTHO05D008101 8.0e-28 127.1 115 58.3
THA.LOC104811416 Tarenaya hassleriana HOM05D006069 ORTHO05D008101 8.0e-28 127.1 113 57.5
Actinidia16995 Actinidia chinensis HOM05D006069 ORTHO05D006669 4.0e-27 124.8 109 56.9
DCAR_016725 Daucus carota HOM05D006069 ORTHO05D008101 5.2e-27 124.4 106 58.5
DCAR_013877 Daucus carota HOM05D006069 ORTHO05D000038 1.5e-26 122.9 104 59.6
Peaxi162Scf00081g00135 Petunia axillaris HOM05D002628 ORTHO05D008101 3.4e-26 121.7 105 56.2
unitig_747.g21531 Utricularia gibba HOM05D006069 ORTHO05D008101 3.4e-26 121.7 101 61.4
BcaC08g47325 Brassica carinata HOM05D006069 ORTHO05D008101 4.4e-26 121.3 120 55.8
BolC6t40015H Brassica oleracea HOM05D006069 ORTHO05D008101 4.4e-26 121.3 120 55.8
Nitab4.5_0000569g0030 Nicotiana tabacum HOM05D006069 ORTHO05D008101 5.8e-26 120.9 106 57.5
Glyma.06G023700 Glycine max HOM05D006069 ORTHO05D008101 7.5e-26 120.6 109 56.0
Ah.00g000260 Amaranthus hybridus HOM05D006069 ORTHO05D008101 9.8e-26 120.2 105 61.0
AUR62041483 Chenopodium quinoa HOM05D006069 ORTHO05D008101 1.3e-25 119.8 104 62.5
Actinidia15431 Actinidia chinensis HOM05D006069 ORTHO05D008101 2.2e-25 119.0 112 53.6
Migut.C00852 Erythranthe guttata HOM05D006069 ORTHO05D008101 2.2e-25 119.0 94 63.8
C06p49760 Brassica napus HOM05D006069 ORTHO05D008101 3.7e-25 118.2 118 54.2
Glyma.17G258800 Glycine max HOM05D006069 ORTHO05D008101 3.7e-25 118.2 104 60.6
Lsat_1_v5_gn_0_33081 Lactuca sativa HOM05D006069 ORTHO05D008101 6.4e-25 117.5 107 59.8
Psat0s2878g0120 Pisum sativum HOM05D006069 ORTHO05D008101 6.4e-25 117.5 107 59.8
Nitab4.5_0007809g0010 Nicotiana tabacum HOM05D006069 ORTHO05D008101 8.3e-25 117.1 106 56.6
Lalb_Chr23g0266111 Lupinus albus HOM05D006069 ORTHO05D008101 5.4e-24 114.4 104 57.7
ECA233G2757 Erigeron canadensis HOM05D006069 ORTHO05D008101 3.5e-23 111.7 95 62.1
SGA_v2.0_scaffold47G17498 Striga asiatica HOM05D006069 ORTHO05D008101 4.6e-23 111.3 106 54.7
Rhsim06G0020100 Rhododendron simsii HOM05D006069 ORTHO05D008101 6.0e-23 110.9 93 61.3
arahy.Tifrunner.gnm1.ann1.Q2AYB8 Arachis hypogaea HOM05D006069 ORTHO05D008101 3.0e-22 108.6 108 54.6
BcaC08g47066 Brassica carinata HOM05D006069 ORTHO05D008101 3.0e-22 108.6 115 53.9
Nitab4.5_0003228g0030 Nicotiana tabacum HOM05D006069 ORTHO05D008101 3.0e-22 108.6 105 55.2
Phvul.009G017800 Phaseolus vulgaris HOM05D006069 ORTHO05D008101 5.0e-22 107.8 94 59.6
Aqoxy5G01811 Aquilegia oxysepala HOM05D006069 ORTHO05D008101 6.6e-22 107.5 117 49.6
PGSC0003DMG400011549 Solanum tuberosum HOM05D006069 ORTHO05D008101 1.1e-21 106.7 115 51.3
Medtr1g025490 Medicago truncatula HOM05D006069 ORTHO05D008101 4.3e-21 104.8 111 49.5
Sopen12g030410 Solanum pennellii HOM05D006069 ORTHO05D008101 4.3e-21 104.8 113 51.3
Psat6g002280 Pisum sativum HOM05D006069 ORTHO05D008101 9.5e-21 103.6 108 49.1
arahy.Tifrunner.gnm1.ann1.KJD857 Arachis hypogaea HOM05D006069 ORTHO05D008101 2.8e-20 102.1 108 51.9
Lalb_Chr11g0061821 Lupinus albus HOM05D006069 ORTHO05D008101 6.8e-19 97.4 104 50.0
PSO700G0183 Papaver somniferum HOM05D006069 ORTHO05D008101 1.3e-17 93.2 115 46.1
PSO170G3064 Papaver somniferum HOM05D006069 ORTHO05D008101 2.9e-17 92.0 111 47.7
Dinv26438 Davidia involucrata HOM05D006069 ORTHO05D008101 1.4e-16 89.7 76 57.9
Peaxi162Scf00160g00114 Petunia axillaris HOM05D006069 ORTHO05D008101 2.4e-16 89.0 108 46.3
AUR62040543 Chenopodium quinoa HOM05D006069 ORTHO05D009490 2.5e-13 79.0 62 71.0
A07p41340 Brassica napus HOM05D006069 ORTHO05D032697 2.0e-10 69.3 68 57.4
SalBow6G6594 Salvia bowleyana HOM05D006069 ORTHO05D008101 1.7e-06 56.2 56 57.1


User provided reference genes

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