Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 2.6e-267 924.9 473 100.0
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 9.0e-204 713.8 466 80.0
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 6.4e-202 707.6 488 76.4
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 9.3e-201 703.7 512 73.6
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 6.2e-189 664.5 479 74.1
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 2.4e-188 662.5 473 72.5
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.2e-184 650.2 475 71.6
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 7.9e-184 647.5 474 72.2
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 1.0e-183 647.1 470 71.5
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 3.0e-183 645.6 482 72.2
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 4.3e-182 641.7 474 70.5
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 4.3e-182 641.7 473 71.5
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.8e-180 636.3 475 71.6
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.4e-180 636.0 475 69.9
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 1.2e-179 633.6 470 71.1
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 2.0e-179 632.9 470 70.0
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 5.9e-179 631.3 474 69.6
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.7e-178 629.8 475 69.7
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 6.5e-178 627.9 474 69.4
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 1.1e-177 627.1 477 70.4
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.4e-177 626.7 474 69.2
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 2.3e-175 619.4 474 68.6
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 1.9e-174 616.3 473 68.7
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 3.3e-174 615.5 474 69.6
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 7.4e-174 614.4 472 71.6
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.7e-173 613.2 489 67.5
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 2.2e-173 612.8 476 69.3
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.1e-172 610.5 450 71.3
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.8e-172 609.8 475 69.1
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.8e-172 609.8 482 68.5
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 4.5e-171 605.1 511 65.8
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 1.2e-168 597.0 467 67.7
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 6.1e-168 594.7 476 67.4
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 2.3e-167 592.8 539 61.0
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 3.0e-167 592.4 474 67.7
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 5.1e-167 591.7 473 67.0
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 8.8e-167 590.9 475 67.4
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 8.8e-167 590.9 476 67.2
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 1.5e-166 590.1 470 67.9
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 5.7e-166 588.2 495 66.5
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.8e-164 583.2 457 68.1
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 3.1e-164 582.4 483 67.3
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 5.3e-164 581.6 481 67.2
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 2.0e-163 579.7 470 66.6
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 3.4e-163 578.9 519 61.7
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 4.5e-163 578.6 481 64.9
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.7e-162 576.6 476 65.8
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 8.5e-162 574.3 468 66.9
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 2.7e-160 569.3 488 66.0
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 4.7e-160 568.5 468 66.2
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 4.7e-160 568.5 470 66.0
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 3.9e-159 565.5 469 65.5
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 4.4e-158 562.0 469 65.2
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 1.3e-157 560.5 476 64.9
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 1.7e-157 560.1 462 66.0
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 2.0e-155 553.1 472 63.3
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 3.5e-155 552.4 484 64.3
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 7.7e-155 551.2 464 65.1
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.0e-154 550.8 468 65.0
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.3e-154 550.4 485 62.1
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 2.5e-153 546.2 469 65.2
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 4.2e-153 545.4 463 65.0
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 1.4e-151 540.4 458 62.9
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 1.8e-151 540.0 494 60.9
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.3e-151 539.7 472 62.7
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 5.2e-151 538.5 478 60.9
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 5.2e-151 538.5 464 63.6
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 6.7e-151 538.1 466 63.9
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 8.8e-151 537.7 477 61.6
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 1.2e-150 537.3 473 62.6
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 1.2e-150 537.3 514 58.0
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.5e-150 537.0 472 61.9
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 3.3e-150 535.8 489 60.3
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.7e-149 533.5 473 62.2
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.8e-149 532.7 472 60.4
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 1.1e-148 530.8 472 60.6
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 1.1e-148 530.8 439 64.7
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 2.4e-148 529.6 479 61.2
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 3.1e-148 529.3 478 62.1
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 2.9e-146 522.7 469 61.2
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 6.5e-146 521.5 473 59.6
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 6.5e-146 521.5 474 60.5
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 7.2e-145 518.1 473 60.7
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 1.4e-143 513.8 475 60.0
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 1.4e-143 513.8 475 60.0
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 3.0e-143 512.7 416 66.3
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 4.0e-143 512.3 460 59.3
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 5.2e-143 511.9 460 60.7
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 8.8e-143 511.1 458 60.3
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 3.4e-142 509.2 477 60.0
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 4.4e-142 508.8 444 61.7
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 3.7e-141 505.8 464 60.6
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.1e-140 504.2 460 59.6
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 2.4e-140 503.1 443 64.8
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 2.4e-140 503.1 465 56.6
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 2.9e-138 496.1 460 58.0
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.5e-137 493.8 467 59.5
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.6e-136 490.3 499 55.7
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.2e-134 484.2 466 59.4
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 5.7e-134 481.9 465 59.4
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 2.8e-133 479.6 412 65.5
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.6e-131 473.8 489 55.8
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 1.0e-130 471.1 483 55.3
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 5.0e-130 468.8 499 54.5
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 1.2e-128 464.2 498 53.2
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.2e-112 411.0 474 51.9
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 2.1e-112 410.2 375 60.5
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.5e-105 386.7 322 67.4
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 4.7e-104 382.5 465 47.7
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 2.0e-102 377.1 381 55.1
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 1.5e-97 360.9 332 61.7
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 4.3e-97 359.4 394 55.1
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 4.4e-94 349.4 545 40.9
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 1.5e-89 334.3 510 41.0
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 2.5e-89 333.6 492 43.5
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.3e-89 332.8 342 57.3
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 1.2e-75 288.1 642 33.8
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 3.5e-67 260.0 540 36.3
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 4.5e-54 216.5 476 35.3
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 2.2e-53 214.2 474 32.1
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 4.5e-46 189.9 515 30.5
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 2.5e-44 184.1 186 58.1
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 4.7e-43 179.9 246 44.7
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 4.7e-43 179.9 246 50.0
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 5.9e-38 162.9 214 45.3
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 2.5e-28 131.0 117 56.4
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 1.0e-26 125.6 213 44.1
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 4.0e-26 123.6 213 43.7
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 5.9e-22 109.8 77 72.7
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 8.0e-19 99.4 177 40.7
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 2.6e-17 94.4 127 40.9
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.7e-16 91.7 74 56.8
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.4e-15 87.8 234 30.8
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 9.2e-15 85.9 84 51.2
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 1.1e-12 79.0 110 46.4
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 5.6e-12 76.6 112 46.4
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 2.8e-11 74.3 65 61.5
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 2.8e-11 74.3 114 41.2
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 8.9e-10 69.3 145 35.9
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 2.2e-08 64.7 93 46.2
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 4.9e-08 63.5 35 80.0
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.1e-07 62.4 93 45.2
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 1.4e-07 62.0 34 82.4
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 9.2e-07 59.3 79 50.6
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 9.2e-07 59.3 83 45.8
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 1.6e-06 58.5 52 55.8


User provided reference genes

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