Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 3.4e-121 438.3 224 100.0
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 4.5e-89 331.6 231 74.0
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 8.6e-88 327.4 227 75.8
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 1.8e-85 319.7 231 72.3
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.5e-84 316.6 231 71.9
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 4.4e-84 315.1 231 70.6
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.8e-82 309.7 224 71.9
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 2.4e-82 309.3 233 69.5
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 7.8e-81 304.3 228 68.4
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 7.8e-81 304.3 234 66.7
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.3e-80 303.5 233 70.0
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 6.6e-80 301.2 229 67.2
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 2.5e-79 299.3 225 70.7
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.6e-78 296.6 232 66.8
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 2.1e-78 296.2 228 65.4
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.6e-78 295.4 210 72.9
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.0e-77 292.0 196 74.0
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 6.8e-77 291.2 227 67.0
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.2e-76 290.4 228 65.8
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.2e-76 290.4 231 64.1
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.0e-76 289.7 233 65.2
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 2.6e-76 289.3 227 69.2
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 5.8e-76 288.1 230 63.9
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 4.9e-75 285.0 200 72.5
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 6.4e-75 284.6 230 64.8
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.4e-75 284.6 227 66.5
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.4e-75 284.6 227 66.5
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 6.4e-75 284.6 227 66.5
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.4e-74 283.5 227 66.1
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.9e-74 283.1 223 66.4
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 3.2e-74 282.3 226 63.3
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 4.1e-74 282.0 231 64.1
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 7.0e-74 281.2 228 63.6
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 9.2e-74 280.8 230 65.7
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 9.2e-74 280.8 230 62.6
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.6e-73 280.0 230 66.5
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 3.5e-73 278.9 229 62.9
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 7.8e-73 277.7 231 61.0
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.3e-72 276.9 229 65.9
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 3.0e-72 275.8 230 63.0
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 3.9e-72 275.4 250 62.8
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 3.9e-72 275.4 230 63.9
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 5.0e-72 275.0 230 63.0
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 6.6e-72 274.6 228 65.4
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 1.5e-71 273.5 227 65.2
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 4.3e-71 271.9 230 64.3
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 4.3e-71 271.9 229 61.1
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 4.3e-71 271.9 230 59.6
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 7.3e-71 271.2 225 60.4
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.5e-71 270.8 224 64.7
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 2.1e-70 269.6 230 60.0
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.8e-70 269.2 232 62.5
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 2.8e-70 269.2 230 59.6
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 2.8e-70 269.2 211 62.1
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 6.2e-70 268.1 192 67.7
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.4e-69 266.9 228 62.7
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 1.8e-69 266.5 230 63.0
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 4.0e-69 265.4 193 72.0
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 5.2e-69 265.0 219 59.8
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 6.8e-69 264.6 230 59.1
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 8.9e-69 264.2 227 63.4
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 2.0e-68 263.1 195 72.3
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 2.0e-68 263.1 227 59.0
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 2.6e-68 262.7 232 60.8
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 3.4e-68 262.3 231 59.3
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 4.4e-68 261.9 230 57.0
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 5.8e-68 261.5 192 66.7
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 7.5e-68 261.2 199 68.8
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 7.5e-68 261.2 221 57.9
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.3e-67 260.4 230 57.4
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 2.9e-67 259.2 230 57.4
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 3.7e-67 258.8 222 60.4
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 4.1e-66 255.4 227 60.4
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 7.1e-66 254.6 230 58.3
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.6e-65 253.4 182 65.4
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 1.6e-65 253.4 227 58.1
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 2.1e-65 253.1 244 54.5
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 1.7e-64 250.0 232 56.0
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 3.9e-64 248.8 226 57.5
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 5.1e-64 248.4 232 55.2
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 6.6e-64 248.1 196 68.4
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 8.6e-64 247.7 193 60.1
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 8.6e-64 247.7 232 56.5
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.5e-63 246.9 231 56.7
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.9e-63 246.5 246 55.7
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 4.3e-63 245.4 193 60.1
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 5.6e-63 245.0 242 54.1
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 7.3e-63 244.6 246 55.3
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 7.3e-63 244.6 246 55.3
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 7.3e-63 244.6 233 57.5
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 9.5e-63 244.2 196 58.2
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 2.1e-62 243.0 227 56.4
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 2.8e-62 242.7 244 55.7
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 3.6e-62 242.3 193 58.5
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 3.6e-62 242.3 193 59.1
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 3.6e-62 242.3 193 59.1
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 8.1e-62 241.1 193 59.1
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 3.1e-61 239.2 188 59.6
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 3.1e-61 239.2 193 57.5
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 4.0e-61 238.8 193 57.0
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.0e-61 238.8 199 57.8
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 5.2e-61 238.4 188 59.6
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 5.2e-61 238.4 229 57.6
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 5.2e-61 238.4 239 53.1
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 6.8e-61 238.0 225 56.9
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.0e-60 236.5 199 57.8
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 3.4e-60 235.7 228 56.6
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.4e-60 235.3 264 51.5
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 7.6e-60 234.6 259 51.0
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 9.9e-60 234.2 224 58.0
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 4.6e-57 225.3 182 58.2
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 1.3e-56 223.8 226 52.7
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.1e-55 220.7 187 60.4
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 6.2e-54 214.9 230 54.8
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.9e-51 206.1 183 56.8
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 6.4e-51 204.9 161 63.4
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.9e-50 203.4 183 55.2
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 9.3e-50 201.1 196 54.6
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-49 200.7 142 69.0
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 2.3e-48 196.4 157 60.5
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 2.3e-48 196.4 231 49.4
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 2.5e-47 193.0 154 62.3
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 3.3e-47 192.6 131 73.3
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 6.2e-46 188.3 233 48.1
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.8e-43 179.1 225 45.3
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 6.6e-40 168.3 134 61.9
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 8.7e-40 167.9 221 44.8
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 5.8e-36 155.2 255 39.2
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.3e-35 154.1 154 52.6
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 3.5e-33 146.0 200 43.5
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.9e-31 140.2 229 39.7
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.5e-31 139.8 188 43.6
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.3e-30 137.5 208 40.9
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.5e-28 130.6 185 42.7
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.9e-26 123.6 116 53.4
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 2.7e-25 119.8 143 46.9
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.3e-23 112.8 77 74.0
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.8e-22 109.8 88 62.5
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.0e-19 101.3 95 54.7
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.8e-13 80.5 72 54.2
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 3.6e-09 66.2 177 30.5
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.8e-08 63.9 77 48.1
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 5.1e-08 62.4 51 64.7
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.5e-07 60.8 77 46.8
FAN27G0705 Fragaria x ananassa HOM05D004951 ORTHO05D005840 5.7e-07 58.9 101 37.6
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 3.7e-06 56.2 80 45.0


User provided reference genes

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