Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p009783 Quercus lobata HOM05D000300 ORTHO05D000383 1.2e-73 279.6 136 100.0
QL04p029061 Quercus lobata HOM05D000300 ORTHO05D000383 1.5e-63 246.1 128 93.8
Haze_02868 Corylus avellana HOM05D000300 ORTHO05D000383 1.6e-52 209.5 136 77.9
Cfa011051 Carpinus fangiana HOM05D000300 ORTHO05D000383 3.3e-50 201.8 128 78.9
Potri.002G139400 Populus trichocarpa HOM05D000300 ORTHO05D000383 7.1e-45 184.1 128 69.5
Sabra14G0035700 Salix brachista HOM05D000300 ORTHO05D000383 4.3e-42 174.9 128 66.4
Sabra14G0037800 Salix brachista HOM05D000300 ORTHO05D000383 4.3e-42 174.9 128 66.4
Potri.014G050300 Populus trichocarpa HOM05D000300 ORTHO05D000383 3.7e-41 171.8 128 64.1
Sabra02G0108500 Salix brachista HOM05D000300 ORTHO05D000383 8.1e-41 170.6 128 65.6
Thecc.01G397900 Theobroma cacao HOM05D000300 ORTHO05D000383 1.1e-40 170.2 129 68.2
TWI14G1082 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 1.1e-40 170.2 129 63.6
Gohir.A08G057500 Gossypium hirsutum HOM05D000300 ORTHO05D000383 2.0e-39 166.0 130 63.8
ClCG05G002610 Citrullus lanatus HOM05D000300 ORTHO05D000383 9.9e-39 163.7 128 63.3
Gohir.D08G066800 Gossypium hirsutum HOM05D000300 ORTHO05D000383 9.9e-39 163.7 130 63.1
Cpa.g.sc41.84 Carica papaya HOM05D000300 ORTHO05D000383 1.7e-38 162.9 129 62.8
Gorai.004G069400 Gossypium raimondii HOM05D000300 ORTHO05D000383 1.7e-38 162.9 130 63.1
Duzib138G0977 Durio zibethinus HOM05D000300 ORTHO05D000383 2.9e-38 162.2 129 65.1
CANSAT25G2881 Cannabis sativa HOM05D000300 ORTHO05D000383 1.4e-37 159.8 135 62.2
Manes.01G273600 Manihot esculenta HOM05D000300 ORTHO05D000383 1.4e-37 159.8 128 64.8
Prupe.2G121900 Prunus persica HOM05D000300 ORTHO05D000383 1.9e-37 159.5 129 59.7
FAN10G1019 Fragaria x ananassa HOM05D000300 ORTHO05D000383 2.4e-37 159.1 132 62.1
FvH4_7g09350 Fragaria vesca HOM05D000300 ORTHO05D000383 1.6e-36 156.4 129 62.0
Sed0016119 Sechium edule HOM05D000300 ORTHO05D000383 2.1e-36 156.0 128 62.5
FAN03G1915 Fragaria x ananassa HOM05D000300 ORTHO05D000383 2.7e-36 155.6 129 61.2
FAN01G0489 Fragaria x ananassa HOM05D000300 ORTHO05D000383 3.5e-36 155.2 129 62.0
FAN06G0367 Fragaria x ananassa HOM05D001878 ORTHO05D001737 4.6e-36 154.8 127 62.2
FAN10G1908 Fragaria x ananassa HOM05D000300 ORTHO05D000383 6.0e-36 154.5 129 61.2
Manes.05G056400 Manihot esculenta HOM05D000300 ORTHO05D000383 6.0e-36 154.5 128 60.2
PGR004G0466 Punica granatum HOM05D000300 ORTHO05D000383 6.0e-36 154.5 129 58.9
RcHm_v2.0_Chr1g0346001 Rosa chinensis HOM05D000300 ORTHO05D000383 6.0e-36 154.5 129 63.6
MD07G1097800 Malus domestica HOM05D000300 ORTHO05D000383 1.0e-35 153.7 128 57.0
Eucgr.D01216 Eucalyptus grandis HOM05D000300 ORTHO05D000383 2.3e-35 152.5 128 61.7
MELO3C006227.2 Cucumis melo HOM05D000300 ORTHO05D000383 3.9e-35 151.8 131 60.3
CsaV3_3G010060 Cucumis sativus L. HOM05D000300 ORTHO05D000383 5.1e-35 151.4 131 59.5
Lj2g0018249 Lotus japonicus HOM05D000300 ORTHO05D000383 2.5e-34 149.1 128 61.7
MD02G1219200 Malus domestica HOM05D000300 ORTHO05D000383 4.3e-34 148.3 128 56.2
Lj3g0006464 Lotus japonicus HOM05D000300 ORTHO05D000383 6.2e-33 144.4 128 59.4
arahy.Tifrunner.gnm1.ann1.F6LU9D Arachis hypogaea HOM05D000300 ORTHO05D000383 1.1e-32 143.7 128 58.6
Sed0001468 Sechium edule HOM05D000300 ORTHO05D000383 1.8e-32 142.9 129 57.4
CSS0023456 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 2.4e-32 142.5 130 56.2
AT1G02150 Arabidopsis thaliana HOM05D000300 ORTHO05D000383 3.1e-32 142.1 128 57.8
Ca_14392_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 3.1e-32 142.1 127 59.8
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 5.3e-32 141.4 105 63.8
Ciclev10019658m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.2e-31 140.2 130 51.5
arahy.Tifrunner.gnm1.ann1.4H476I Arachis hypogaea HOM05D000300 ORTHO05D000383 2.6e-31 139.0 130 57.7
CARHR000170 Cardamine hirsuta HOM05D000300 ORTHO05D000383 7.6e-31 137.5 128 56.2
AL1G10070 Arabidopsis lyrata HOM05D000300 ORTHO05D000383 1.0e-30 137.1 128 57.0
Duzib268G0370 Durio zibethinus HOM05D000300 ORTHO05D000383 1.3e-30 136.7 130 56.2
Medtr8g007365 Medicago truncatula HOM05D000300 ORTHO05D000383 2.2e-30 136.0 124 58.1
Ca_14795_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 2.9e-30 135.6 127 56.7
Hma1.2p1_1623F.1_g294120 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 3.8e-30 135.2 137 54.7
Nitab4.5_0000563g0220 Nicotiana tabacum HOM05D000300 ORTHO05D000383 3.8e-30 135.2 134 55.2
Sp1g00100 Schrenkiella parvula HOM05D000300 ORTHO05D000383 3.8e-30 135.2 128 57.0
VMungo0331G0487 Vigna mungo HOM05D000300 ORTHO05D000383 3.8e-30 135.2 126 55.6
TPR.G32144 Trifolium pratense HOM05D000300 ORTHO05D000383 6.5e-30 134.4 128 54.7
A10p00080 Brassica napus HOM05D000300 ORTHO05D000383 8.4e-30 134.0 128 56.2
BraA10t42286Z Brassica rapa HOM05D000300 ORTHO05D000383 8.4e-30 134.0 128 56.2
Glyma.07G119200 Glycine max HOM05D000300 ORTHO05D000383 1.1e-29 133.7 131 55.0
Thhalv10007383m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 1.9e-29 132.9 128 56.2
Nn1g00783 Nelumbo nucifera HOM05D000300 ORTHO05D000383 1.9e-29 132.9 81 69.1
TAR375G0674 Trochodendron aralioides HOM05D000300 ORTHO05D000383 1.9e-29 132.9 81 69.1
Ah.05g177980 Amaranthus hybridus HOM05D000300 ORTHO05D000383 2.5e-29 132.5 129 52.7
Aa31LG1G11560 Aethionema arabicum HOM05D000300 ORTHO05D000383 3.2e-29 132.1 128 53.9
Medtr8g031520 Medicago truncatula HOM05D000300 ORTHO05D000383 4.2e-29 131.7 82 70.7
Peaxi162Scf00853g00422 Petunia axillaris HOM05D000300 ORTHO05D000383 4.2e-29 131.7 132 54.5
Carub.0001s0003 Capsella rubella HOM05D000300 ORTHO05D000383 5.5e-29 131.3 128 56.2
Phvul.010G045500 Phaseolus vulgaris HOM05D000300 ORTHO05D000383 2.1e-28 129.4 126 52.4
BcaB03g13636 Brassica carinata HOM05D000300 ORTHO05D000383 2.7e-28 129.0 128 54.7
C05p00050 Brassica napus HOM05D000300 ORTHO05D000383 2.7e-28 129.0 128 54.7
BolC5t28792H Brassica oleracea HOM05D000300 ORTHO05D000383 2.7e-28 129.0 128 54.7
Hma1.2p1_0622F.1_g190880 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 2.7e-28 129.0 132 51.5
Atru.BG.60.p Acer truncatum HOM05D000300 ORTHO05D000383 4.6e-28 128.3 79 69.6
TPR.G32158 Trifolium pratense HOM05D000300 ORTHO05D000383 7.9e-28 127.5 128 52.3
Glyma.03G108100 Glycine max HOM05D000300 ORTHO05D000383 1.0e-27 127.1 134 53.0
CDE04G3505 Ceratophyllum demersum HOM05D000300 ORTHO05D000383 1.3e-27 126.7 117 54.7
Sopen01g035710 Solanum pennellii HOM05D000300 ORTHO05D000383 8.7e-27 124.0 115 54.8
CANSAT25G1191 Cannabis sativa HOM05D000300 ORTHO05D000383 1.1e-26 123.6 130 55.4
Solyc01g089870.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 1.5e-26 123.2 137 50.4
EL10Ac1g00744 Beta vulgaris HOM05D000300 ORTHO05D000383 2.5e-26 122.5 131 46.6
CAN.G1585.5 Capsicum annuum HOM05D000300 ORTHO05D000383 2.5e-26 122.5 131 52.7
Migut.B01507 Erythranthe guttata HOM05D000300 ORTHO05D000383 3.3e-26 122.1 113 54.0
PGSC0003DMG400031170 Solanum tuberosum HOM05D000300 ORTHO05D000383 4.3e-26 121.7 137 49.6
Lalb_Chr12g0210471 Lupinus albus HOM05D000300 ORTHO05D000383 5.7e-26 121.3 87 65.5
DCAR_025055 Daucus carota HOM05D000300 ORTHO05D000383 7.4e-26 120.9 138 47.8
MSTRG.20673 Avicennia marina HOM05D000300 ORTHO05D000383 1.6e-25 119.8 90 62.2
Oeu019258.1 Olea europaea HOM05D000300 ORTHO05D000383 8.2e-25 117.5 78 67.9
Oeu037438.2 Olea europaea HOM05D000300 ORTHO05D000383 1.2e-23 113.6 138 44.2
SalBow5G2486 Salvia bowleyana HOM05D000300 ORTHO05D000383 2.0e-23 112.8 142 49.3
THA.LOC104814062 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 2.2e-22 109.4 126 48.4
Rhsim07G0037800 Rhododendron simsii HOM05D000300 ORTHO05D000383 3.8e-22 108.6 134 44.8
vmacro13512 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 3.8e-22 108.6 137 44.5
HanXRQChr17g0562551 Helianthus annuus HOM05D000300 ORTHO05D000383 1.1e-21 107.1 129 49.6
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 1.6e-20 103.2 80 61.2
Lj9C554G0 Lonicera japonica HOM05D000300 ORTHO05D000383 1.6e-20 103.2 78 61.5
SGA_v2.0_scaffold340G49333 Striga asiatica HOM05D000300 ORTHO05D000383 7.9e-20 100.9 89 49.4
unitig_750.g28409 Utricularia gibba HOM05D000976 ORTHO05D000383 7.9e-20 100.9 91 50.5
Lsat_1_v5_gn_1_82301 Lactuca sativa HOM05D000300 ORTHO05D000383 2.3e-19 99.4 97 52.6
PSO063G2780 Papaver somniferum HOM05D000300 ORTHO05D000383 3.9e-19 98.6 140 42.1
ATR0665G093 Amborella trichopoda HOM05D000300 ORTHO05D000383 8.8e-19 97.4 80 56.2
HanXRQChr11g0344091 Helianthus annuus HOM05D000300 ORTHO05D000383 1.1e-18 97.1 101 53.5
Lsat_1_v5_gn_4_39241 Lactuca sativa HOM05D000300 ORTHO05D000383 1.9e-18 96.3 122 42.6
Sc26g0001670 Simmondsia chinensis HOM05D000300 ORTHO05D000383 1.9e-18 96.3 79 51.9
Hund17108 Selenicereus undatus HOM05D000300 ORTHO05D000383 1.1e-16 90.5 118 44.1
Aqoxy3G02670 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 4.1e-16 88.6 76 50.0
Lj7A548T51 Lonicera japonica HOM05D000300 ORTHO05D000383 6.9e-16 87.8 133 45.1
PSO782G5511 Papaver somniferum HOM05D000300 ORTHO05D000383 6.9e-16 87.8 72 56.9
SGA_v2.0_scaffold340G49335 Striga asiatica HOM05D000300 ORTHO05D000383 9.1e-16 87.4 82 50.0
Aqoxy5G02726 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 1.5e-15 86.7 77 49.4
arahy.Tifrunner.gnm1.ann1.U2HF56 Arachis hypogaea HOM05D000300 ORTHO05D000383 4.5e-15 85.1 139 43.2
arahy.Tifrunner.gnm1.ann1.FFNM3A Arachis hypogaea HOM05D000300 ORTHO05D000383 5.9e-15 84.7 139 43.2
HanXRQChr16g0521181 Helianthus annuus HOM05D000300 ORTHO05D000383 5.9e-15 84.7 136 42.6
HPP92_001535 Vanilla planifolia HOM05D000300 ORTHO05D000383 5.9e-15 84.7 101 42.6
ECA248G3482 Erigeron canadensis HOM05D000300 ORTHO05D000383 1.0e-14 84.0 70 57.1
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 1.3e-14 83.6 142 36.6
SGA_v2.0_scaffold52G19251 Striga asiatica HOM05D000300 ORTHO05D000383 1.7e-14 83.2 140 37.9
GSVIVG01018303001 Vitis vinifera HOM05D000300 ORTHO05D000383 3.8e-14 82.0 48 75.0
CiPaw.13G024800 Carya illinoinensis HOM05D000300 ORTHO05D000383 8.5e-14 80.9 47 76.6
CiPaw.14G019400 Carya illinoinensis HOM05D000300 ORTHO05D000383 1.1e-13 80.5 47 76.6
Actinidia05776 Actinidia chinensis HOM05D000300 ORTHO05D000383 1.9e-13 79.7 59 54.2
Zm00001eb075140 Zea mays HOM05D000300 ORTHO05D000383 2.5e-13 79.3 76 46.1
Os04g0544400 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D000383 5.5e-13 78.2 76 43.4
vmacro13513 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 5.5e-13 78.2 72 47.2
Hund17107 Selenicereus undatus HOM05D000300 ORTHO05D000383 1.2e-12 77.0 71 50.7
SGA_v2.0_scaffold52G19248 Striga asiatica HOM05D000300 ORTHO05D000383 6.1e-12 74.7 142 33.1
Dinv44046 Davidia involucrata HOM05D000300 ORTHO05D000383 7.9e-12 74.3 48 64.6
SGA_v2.0_scaffold52G19250 Striga asiatica HOM05D000300 ORTHO05D000383 6.7e-11 71.2 140 35.7
Cc02_g25250 Coffea canephora HOM05D000300 ORTHO05D000383 4.4e-10 68.6 48 62.5
Nitab4.5_0007060g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 2.8e-09 65.9 49 57.1
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.8e-08 63.2 44 54.5
ATR0598G167 Amborella trichopoda HOM05D000300 ORTHO05D000383 3.1e-08 62.4 97 35.1
Oeu000004.1 Olea europaea HOM05D000300 ORTHO05D000383 5.3e-08 61.6 43 62.8
CiPaw.10G047800 Carya illinoinensis HOM05D000300 ORTHO05D000383 2.6e-07 59.3 53 50.9
Sc07g0007900 Simmondsia chinensis HOM05D000300 ORTHO05D000383 3.4e-07 58.9 71 43.7
Actinidia03955 Actinidia chinensis HOM05D000300 ORTHO05D000383 4.5e-07 58.5 68 41.2
Dinv07554 Davidia involucrata HOM05D000300 ORTHO05D000383 4.5e-07 58.5 54 51.9
Actinidia05627 Actinidia chinensis HOM05D000300 ORTHO05D000383 1.0e-06 57.4 58 44.8
CSS0029523 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 1.3e-06 57.0 71 40.8
vmacro07531 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 1.7e-06 56.6 62 43.5
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 2.2e-06 56.2 73 38.4
Rhsim03G0056900 Rhododendron simsii HOM05D000300 ORTHO05D000383 2.2e-06 56.2 60 45.0
MELO3C002597.2 Cucumis melo HOM05D000300 ORTHO05D000383 3.8e-06 55.5 52 51.9
MBI18_g16992_MAGBIO Magnolia biondii HOM05D000300 ORTHO05D000383 3.8e-06 55.5 62 40.3
Rhsim03G0057200 Rhododendron simsii HOM05D000300 ORTHO05D000383 3.8e-06 55.5 56 48.2
SEGI_24974 Sequoiadendron giganteum HOM05D000300 ORTHO05D018168 5.0e-06 55.1 59 40.7
CiPaw.10G022400 Carya illinoinensis HOM05D000300 ORTHO05D000383 6.5e-06 54.7 54 46.3
Cc02_g13280 Coffea canephora HOM05D000300 ORTHO05D000383 6.5e-06 54.7 54 50.0
Lsat_1_v5_gn_7_21100 Lactuca sativa HOM05D000300 ORTHO05D000383 6.5e-06 54.7 53 45.3
Potri.011G120900 Populus trichocarpa HOM05D000300 ORTHO05D000383 8.5e-06 54.3 57 45.6


User provided reference genes

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