Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.9e-41 172.2 90 100.0
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 4.0e-28 127.9 68 97.1
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 9.9e-27 123.2 68 92.6
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 1.2e-24 116.3 68 88.2
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.0e-23 113.2 68 83.8
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 6.6e-23 110.5 66 83.3
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 4.3e-22 107.8 67 82.1
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 6.2e-21 104.0 66 80.3
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 6.2e-21 104.0 67 77.6
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 6.2e-21 104.0 67 77.6
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.1e-20 103.2 66 80.3
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.1e-20 103.2 66 78.8
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.1e-20 103.2 66 78.8
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.4e-20 102.8 68 75.0
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 3.1e-20 101.7 67 79.1
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 3.1e-20 101.7 65 80.0
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.1e-20 101.7 65 80.0
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.1e-20 101.7 65 80.0
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.1e-20 101.7 65 80.0
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.1e-20 101.7 62 82.3
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 3.1e-20 101.7 62 82.3
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 4.0e-20 101.3 66 77.3
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 5.2e-20 100.9 68 76.5
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 6.8e-20 100.5 65 80.0
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 8.9e-20 100.1 62 80.6
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 1.5e-19 99.4 66 78.8
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.5e-19 99.4 64 78.1
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.5e-19 99.4 66 77.3
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.5e-19 99.4 66 78.8
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.0e-19 99.0 66 77.3
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 2.0e-19 99.0 65 78.5
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 2.0e-19 99.0 65 75.4
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.6e-19 98.6 64 76.6
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 3.4e-19 98.2 64 78.1
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 3.4e-19 98.2 65 76.9
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 3.4e-19 98.2 64 78.1
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 3.4e-19 98.2 65 76.9
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 3.4e-19 98.2 67 73.1
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 4.4e-19 97.8 67 76.1
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 4.4e-19 97.8 66 72.7
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 4.4e-19 97.8 67 73.1
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 4.4e-19 97.8 65 76.9
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 7.6e-19 97.1 62 79.0
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-18 96.3 61 80.3
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.3e-18 96.3 66 72.7
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 1.3e-18 96.3 66 77.3
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.7e-18 95.9 62 77.4
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.7e-18 95.9 66 72.7
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.7e-18 95.9 66 75.8
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.7e-18 95.9 66 72.7
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.2e-18 95.5 68 70.6
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.2e-18 95.5 66 72.7
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 2.9e-18 95.1 66 75.8
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 2.9e-18 95.1 66 75.8
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 2.9e-18 95.1 61 78.7
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 2.9e-18 95.1 62 79.0
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 3.8e-18 94.7 63 76.2
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 3.8e-18 94.7 68 72.1
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 3.8e-18 94.7 64 75.0
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 3.8e-18 94.7 75 69.3
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 4.9e-18 94.4 63 74.6
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 4.9e-18 94.4 65 70.8
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 4.9e-18 94.4 64 73.4
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 4.9e-18 94.4 66 74.2
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 6.4e-18 94.0 66 74.2
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 6.4e-18 94.0 66 74.2
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 6.4e-18 94.0 65 72.3
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.1e-17 93.2 68 70.6
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.1e-17 93.2 65 70.8
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.1e-17 93.2 67 70.1
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.1e-17 93.2 65 72.3
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.1e-17 93.2 65 72.3
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.4e-17 92.8 67 74.6
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.4e-17 92.0 67 73.1
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 3.2e-17 91.7 63 71.4
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 3.2e-17 91.7 63 69.8
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 3.2e-17 91.7 63 69.8
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 3.2e-17 91.7 63 69.8
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 3.2e-17 91.7 63 69.8
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 3.2e-17 91.7 63 69.8
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 3.2e-17 91.7 63 69.8
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 3.2e-17 91.7 73 69.9
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 3.2e-17 91.7 68 70.6
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 3.2e-17 91.7 64 73.4
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 4.2e-17 91.3 63 71.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.2e-17 91.3 63 71.4
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 4.2e-17 91.3 65 67.7
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 5.4e-17 90.9 66 74.2
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 5.4e-17 90.9 68 64.7
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 7.1e-17 90.5 66 69.7
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 7.1e-17 90.5 66 66.7
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 9.2e-17 90.1 66 69.7
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-16 89.7 61 70.5
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.2e-16 89.7 63 69.8
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.2e-16 89.7 66 68.2
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.6e-16 89.4 64 68.8
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.6e-16 89.4 67 70.1
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.1e-16 89.0 63 69.8
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.7e-16 88.6 63 69.8
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 3.5e-16 88.2 67 71.6
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 4.6e-16 87.8 63 71.4
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 8.7e-15 83.6 61 72.1
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.1e-14 83.2 62 71.0
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 2.5e-14 82.0 65 64.6
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 3.3e-14 81.6 52 75.0
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 3.3e-14 81.6 52 75.0
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.6e-13 79.3 66 60.6
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 2.1e-13 79.0 61 60.7
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 2.1e-13 79.0 61 67.2
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 3.6e-13 78.2 62 62.9
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 3.6e-13 78.2 62 62.9
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 3.6e-13 78.2 62 62.9
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 3.6e-13 78.2 62 62.9
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 3.6e-13 78.2 62 62.9
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 3.6e-13 78.2 60 70.0
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.6e-13 78.2 62 62.9
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.6e-13 78.2 62 62.9
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 4.7e-13 77.8 65 61.5
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 6.2e-13 77.4 62 62.9
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 6.2e-13 77.4 62 62.9
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 6.2e-13 77.4 62 62.9
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 8.1e-13 77.0 67 64.2
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-12 76.6 66 59.1
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.1e-12 76.6 50 74.0
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.4e-12 75.5 77 49.4
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.4e-12 75.5 49 73.5
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.4e-12 75.5 49 73.5
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 9.0e-12 73.6 58 63.8
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 2.9e-10 68.6 63 55.6
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 8.4e-10 67.0 144 39.6
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 5.4e-09 64.3 64 50.0
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.6e-08 61.2 80 48.8


User provided reference genes

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