Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 4.3e-122 441.4 236 100.0
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 3.8e-86 322.0 246 73.6
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 5.1e-75 285.0 203 75.9
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 7.4e-74 281.2 211 69.7
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 3.7e-73 278.9 232 67.2
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 9.1e-72 274.2 253 63.2
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 1.3e-70 270.4 229 65.5
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 5.0e-70 268.5 232 64.7
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 1.1e-69 267.3 224 67.0
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 1.1e-69 267.3 234 63.2
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 1.4e-69 266.9 235 63.0
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 1.9e-69 266.5 252 62.7
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 3.2e-69 265.8 246 63.8
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 7.2e-69 264.6 233 62.2
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.1e-68 263.1 246 62.2
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.4e-67 260.4 236 60.6
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 2.3e-67 259.6 233 60.9
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 3.9e-67 258.8 233 63.1
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 5.1e-67 258.5 235 60.4
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 5.1e-67 258.5 232 61.6
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 1.1e-66 257.3 255 60.4
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 1.5e-66 256.9 245 61.6
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 1.5e-66 256.9 220 67.7
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 1.5e-66 256.9 238 61.8
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 2.6e-66 256.1 235 60.4
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 4.4e-66 255.4 233 58.8
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 5.7e-66 255.0 243 63.0
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 9.7e-66 254.2 233 60.5
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 9.7e-66 254.2 219 62.6
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 2.8e-65 252.7 223 64.1
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 1.4e-64 250.4 240 61.7
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 1.8e-64 250.0 224 62.1
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 1.8e-64 250.0 237 58.6
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 1.8e-64 250.0 196 66.8
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 2.4e-64 249.6 237 59.9
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 1.2e-63 247.3 195 66.7
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 3.5e-63 245.7 235 59.1
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 3.5e-63 245.7 211 64.9
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 4.5e-63 245.4 236 58.9
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 5.9e-63 245.0 231 59.3
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 1.0e-62 244.2 195 65.1
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 1.3e-62 243.8 216 64.8
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 1.3e-62 243.8 236 58.9
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 2.2e-62 243.0 227 59.9
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 1.5e-61 240.4 233 58.8
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 1.9e-61 240.0 213 61.0
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 2.5e-61 239.6 212 61.8
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 4.2e-61 238.8 237 56.5
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 5.5e-61 238.4 237 57.0
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 5.5e-61 238.4 245 55.5
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 7.2e-61 238.0 196 66.3
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 9.4e-61 237.7 220 61.8
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 1.2e-60 237.3 196 63.8
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 1.6e-60 236.9 211 61.6
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 3.6e-60 235.7 196 65.8
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 4.7e-60 235.3 196 65.3
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 4.7e-60 235.3 196 65.3
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 1.4e-59 233.8 212 59.9
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 1.8e-59 233.4 196 63.3
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 2.3e-59 233.0 224 58.9
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 3.0e-59 232.6 227 57.3
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 4.0e-59 232.3 182 63.2
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 4.0e-59 232.3 217 59.4
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 8.8e-59 231.1 196 64.8
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 1.1e-58 230.7 196 63.8
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 2.0e-58 229.9 170 67.6
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 3.3e-58 229.2 170 67.1
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 4.4e-58 228.8 236 55.9
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 9.7e-58 227.6 236 53.4
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 9.7e-58 227.6 239 54.8
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 1.7e-57 226.9 215 59.5
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 1.1e-56 224.2 180 67.2
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 4.1e-56 222.2 244 52.0
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 1.2e-55 220.7 162 66.7
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 1.0e-54 217.6 203 57.6
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 2.2e-54 216.5 284 50.4
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 1.5e-53 213.8 206 61.2
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 4.2e-53 212.2 186 58.6
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 8.0e-52 208.0 169 62.1
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 3.0e-51 206.1 241 51.9
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 4.8e-49 198.7 222 52.3
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 8.3e-49 198.0 200 56.0
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 5.0e-46 188.7 203 54.7
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 8.5e-46 188.0 203 54.2
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 3.2e-45 186.0 184 55.4
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.4e-43 180.6 227 49.8
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 2.6e-42 176.4 173 53.2
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 2.8e-41 172.9 121 71.1
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 2.8e-41 172.9 134 67.2
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 3.1e-40 169.5 220 48.6
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 7.0e-40 168.3 171 52.0
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.6e-39 167.2 171 50.3
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 2.1e-36 156.8 170 46.5
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 1.8e-35 153.7 169 48.5
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 2.3e-35 153.3 200 50.5
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 4.1e-32 142.5 208 40.9
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 5.9e-31 138.7 134 57.5
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 2.3e-30 136.7 98 71.4
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.5e-26 124.0 89 69.7
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 9.8e-26 121.3 89 69.7
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 1.5e-21 107.5 221 37.1
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 7.3e-21 105.1 108 56.5
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 6.2e-20 102.1 108 52.8
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 2.3e-19 100.1 95 53.7
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 1.1e-11 74.7 53 64.2
Dinv39425 Davidia involucrata HOM05D002064 ORTHO05D002118 6.4e-09 65.5 47 68.1
SGA_v2.0_scaffold54G19517 Striga asiatica HOM05D007221 ORTHO05D009204 8.6e-06 55.1 95 41.1


User provided reference genes

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