Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p008626 Quercus lobata HOM05D006598 ORTHO05D008132 6.0e-194 680.6 336 100.0
CiPaw.15G078300 Carya illinoinensis HOM05D006598 ORTHO05D008132 2.8e-167 592.0 336 86.6
Cfa018154 Carpinus fangiana HOM05D006598 ORTHO05D008132 5.5e-163 577.8 337 84.6
Haze_17965 Corylus avellana HOM05D006598 ORTHO05D008132 2.7e-162 575.5 338 84.9
Prupe.1G379200 Prunus persica HOM05D006598 ORTHO05D008132 5.1e-161 571.2 335 81.8
Dinv36084 Davidia involucrata HOM05D006598 ORTHO05D008132 4.8e-159 564.7 333 81.1
Dinv39426 Davidia involucrata HOM05D006598 ORTHO05D008132 8.2e-159 563.9 335 81.2
FAN15G1256 Fragaria x ananassa HOM05D006598 ORTHO05D008132 7.6e-157 557.4 335 78.8
FvH4_2g39790 Fragaria vesca HOM05D006598 ORTHO05D008132 2.9e-156 555.4 335 77.9
Atru.chr13.478 Acer truncatum HOM05D006598 ORTHO05D008132 3.8e-156 555.1 335 78.8
FAN20G2142 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.4e-155 553.1 335 77.6
FAN27G1472 Fragaria x ananassa HOM05D006598 ORTHO05D008132 3.2e-155 552.0 335 77.3
CSS0023084 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 2.7e-154 548.9 335 77.9
Potri.002G260300 Populus trichocarpa HOM05D006598 ORTHO05D008132 8.7e-153 543.9 334 78.7
Ciclev10001322m.g Citrus clementina HOM05D006598 ORTHO05D008132 2.8e-151 538.9 334 76.9
Phvul.009G057800 Phaseolus vulgaris HOM05D006598 ORTHO05D008132 2.8e-151 538.9 335 76.4
GSVIVG01009711001 Vitis vinifera HOM05D006598 ORTHO05D008132 4.1e-150 535.0 331 77.3
CANSAT25G2965 Cannabis sativa HOM05D006598 ORTHO05D008132 1.5e-149 533.1 335 76.4
Medtr3g111840 Medicago truncatula HOM05D006598 ORTHO05D008132 1.5e-149 533.1 334 75.4
VMungo1309G1899 Vigna mungo HOM05D006598 ORTHO05D008132 2.0e-149 532.7 335 74.3
Sabra02G0198100 Salix brachista HOM05D006598 ORTHO05D008132 2.6e-149 532.3 334 77.2
Glyma.04G032000 Glycine max HOM05D006598 ORTHO05D008132 1.0e-148 530.4 336 75.9
Glyma.06G032100 Glycine max HOM05D006598 ORTHO05D008132 1.0e-148 530.4 336 76.8
CSS0013932 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 2.9e-148 528.9 326 77.3
Actinidia38007 Actinidia chinensis HOM05D006598 ORTHO05D008132 5.0e-148 528.1 332 75.6
Lj4A39T66 Lonicera japonica HOM05D006598 ORTHO05D008132 1.1e-147 526.9 335 76.1
Actinidia15332 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.9e-147 526.2 334 76.0
Cpa.g.sc36.79 Carica papaya HOM05D006598 ORTHO05D008132 1.6e-146 523.1 335 75.5
TAR625G1490 Trochodendron aralioides HOM05D006598 ORTHO05D008132 2.1e-146 522.7 335 76.1
Ca_15516_v3 Cicer arietinum L. HOM05D006598 ORTHO05D008132 2.7e-146 522.3 329 74.5
Duzib116G0116 Durio zibethinus HOM05D006598 ORTHO05D008132 7.9e-146 520.8 334 76.9
Psat5g017160 Pisum sativum HOM05D006598 ORTHO05D008132 1.4e-145 520.0 334 74.3
Manes.18G026900 Manihot esculenta HOM05D006598 ORTHO05D008132 2.0e-144 516.2 333 75.1
TPR.G12344 Trifolium pratense HOM05D006598 ORTHO05D008132 3.7e-143 511.9 334 72.8
COL.COLO4_26313 Corchorus olitorius HOM05D006598 ORTHO05D008132 8.2e-143 510.8 332 76.5
MBI16_g31005_MAGBIO Magnolia biondii HOM05D006598 ORTHO05D008132 8.2e-143 510.8 337 73.3
Sed0027447 Sechium edule HOM05D006598 ORTHO05D008132 1.4e-142 510.0 324 74.1
vmacro21641 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 1.8e-142 509.6 336 73.5
arahy.Tifrunner.gnm1.ann1.KF7WGB Arachis hypogaea HOM05D006598 ORTHO05D008132 2.4e-142 509.2 327 74.6
arahy.Tifrunner.gnm1.ann1.9Y7K4V Arachis hypogaea HOM05D006598 ORTHO05D008132 5.3e-142 508.1 327 74.3
PSO541G3348 Papaver somniferum HOM05D006598 ORTHO05D008132 5.3e-142 508.1 335 72.5
Lj1g0003551 Lotus japonicus HOM05D006598 ORTHO05D008132 1.3e-140 503.4 335 73.4
Rhsim07G0239600 Rhododendron simsii HOM05D006598 ORTHO05D008132 1.3e-140 503.4 326 73.3
TWI36G0987 Tripterygium wilfordii HOM05D006598 ORTHO05D008132 1.7e-140 503.1 336 74.7
Aqoxy6G01111 Aquilegia oxysepala HOM05D006598 ORTHO05D008132 8.5e-140 500.7 335 72.5
vmacro04528 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 2.5e-139 499.2 325 73.2
Rhsim06G0033600 Rhododendron simsii HOM05D006598 ORTHO05D008132 5.5e-139 498.0 334 71.6
Migut.C00732 Erythranthe guttata HOM05D006598 ORTHO05D008132 9.4e-139 497.3 335 71.6
Sc02g0006160 Simmondsia chinensis HOM05D006598 ORTHO05D008132 1.2e-138 496.9 330 72.4
PSO675G7094 Papaver somniferum HOM05D006598 ORTHO05D008132 2.1e-138 496.1 331 71.6
Eucgr.F01894 Eucalyptus grandis HOM05D006598 ORTHO05D008132 1.4e-137 493.4 332 72.6
ECA232G3558 Erigeron canadensis HOM05D006598 ORTHO05D008132 2.3e-137 492.7 332 72.0
MSTRG.25174 Avicennia marina HOM05D006598 ORTHO05D008132 3.9e-137 491.9 333 72.4
SalBow7G0748 Salvia bowleyana HOM05D006598 ORTHO05D008132 5.1e-137 491.5 329 72.3
Cc10_g02850 Coffea canephora HOM05D006598 ORTHO05D008132 6.7e-137 491.1 336 70.2
PGSC0003DMG400003679 Solanum tuberosum HOM05D006598 ORTHO05D008132 2.6e-136 489.2 338 71.3
CAN.G1226.16 Capsicum annuum HOM05D006598 ORTHO05D008132 1.3e-135 486.9 338 70.7
TAR628G1208 Trochodendron aralioides HOM05D006598 ORTHO05D008132 4.8e-135 485.0 309 74.4
Lalb_Chr11g0062331 Lupinus albus HOM05D006598 ORTHO05D008132 6.3e-135 484.6 333 70.9
THA.LOC104806941 Tarenaya hassleriana HOM05D006598 ORTHO05D008132 3.1e-134 482.3 326 71.2
Solyc04g080380.3 Solanum lycopersicum HOM05D006598 ORTHO05D008132 9.1e-134 480.7 338 70.4
Sopen04g033970 Solanum pennellii HOM05D006598 ORTHO05D008132 1.2e-133 480.3 338 70.7
Nitab4.5_0010510g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 2.2e-132 476.1 338 70.7
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 3.8e-132 475.3 336 69.3
Nitab4.5_0006280g0060 Nicotiana tabacum HOM05D006598 ORTHO05D008132 6.5e-132 474.6 338 70.7
Hund26575 Selenicereus undatus HOM05D006598 ORTHO05D008132 8.5e-132 474.2 332 68.4
Thecc.08G027000 Theobroma cacao HOM05D006598 ORTHO05D008132 4.2e-131 471.9 334 72.5
Aa31LG9G12810 Aethionema arabicum HOM05D006598 ORTHO05D008132 1.2e-130 470.3 342 67.0
CARHR181720 Cardamine hirsuta HOM05D006598 ORTHO05D008132 1.4e-129 466.8 331 66.8
AL8G18360 Arabidopsis lyrata HOM05D006598 ORTHO05D008132 1.8e-129 466.5 341 66.3
Thhalv10003240m.g Eutrema salsugineum HOM05D006598 ORTHO05D008132 2.3e-129 466.1 316 69.9
BcaC02g10811 Brassica carinata HOM05D006598 ORTHO05D008132 3.0e-129 465.7 316 69.6
C04p24910 Brassica napus HOM05D006598 ORTHO05D008132 3.0e-129 465.7 316 69.6
BolC4t23991H Brassica oleracea HOM05D006598 ORTHO05D008132 3.0e-129 465.7 316 69.6
A06p48250 Brassica napus HOM05D006598 ORTHO05D008132 3.9e-129 465.3 316 69.6
BraA06t27693Z Brassica rapa HOM05D006598 ORTHO05D008132 3.9e-129 465.3 316 69.6
BcaC06g31749 Brassica carinata HOM05D006598 ORTHO05D008132 2.6e-128 462.6 330 67.0
Sp2g07390 Schrenkiella parvula HOM05D006598 ORTHO05D008132 4.4e-128 461.8 321 68.8
Lsat_1_v5_gn_4_119301 Lactuca sativa HOM05D006598 ORTHO05D008132 5.7e-128 461.5 328 69.2
Carub.0008s0618 Capsella rubella HOM05D006598 ORTHO05D008132 1.3e-127 460.3 319 68.7
AUR62035446 Chenopodium quinoa HOM05D006598 ORTHO05D008132 1.2e-125 453.8 323 69.3
AT5G42760 Arabidopsis thaliana HOM05D006598 ORTHO05D008132 2.0e-125 453.0 336 65.8
HPP92_018806 Vanilla planifolia HOM05D006598 ORTHO05D008132 2.6e-125 452.6 328 66.8
CDE04G2166 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 8.5e-124 447.6 337 65.6
Ah.11g043150 Amaranthus hybridus HOM05D006598 ORTHO05D008132 1.6e-122 443.4 332 65.7
SGA_v2.0_scaffold54G19518 Striga asiatica HOM05D006598 ORTHO05D008132 2.3e-121 439.5 321 66.0
ATR0810G155 Amborella trichopoda HOM05D006598 ORTHO05D008132 7.5e-120 434.5 322 65.2
Oeu049953.1 Olea europaea HOM05D006598 ORTHO05D008132 6.5e-116 421.4 336 63.1
Nitab4.5_0005730g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 8.8e-113 411.0 331 62.8
Os03g0775000 Oryza sativa ssp. japonica HOM05D006598 ORTHO05D008132 8.9e-105 384.4 310 61.6
Zm00001eb059150 Zea mays HOM05D006598 ORTHO05D008132 3.4e-104 382.5 314 59.6
CDE06G0448 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 1.2e-101 374.0 295 64.4
SEGI_39292 Sequoiadendron giganteum HOM05D006598 ORTHO05D008132 4.5e-101 372.1 330 57.3
TAR381G1379 Trochodendron aralioides HOM05D006598 ORTHO05D008132 3.5e-93 345.9 207 79.7
HPP92_018704 Vanilla planifolia HOM05D006598 ORTHO05D008132 7.8e-85 318.2 253 63.2
AagrBONN_evm.TU.Sc2ySwM_228.3129 Anthoceros agrestis HOM05D006598 ORTHO05D008132 1.3e-84 317.4 318 50.9
Pp3c8_2950 Physcomitrium patens HOM05D006598 ORTHO05D008132 1.9e-83 313.5 309 52.1
Pp3c4_6590 Physcomitrium patens HOM05D006598 ORTHO05D008132 4.7e-82 308.9 307 51.5
Nn5g29606 Nelumbo nucifera HOM05D006598 ORTHO05D008132 1.8e-81 307.0 215 72.6
Nitab4.5_0001091g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 2.0e-80 303.5 203 70.0
CSS0023478 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 4.7e-74 282.3 161 82.0
HanXRQChr16g0508491 Helianthus annuus HOM05D006598 ORTHO05D008132 7.1e-70 268.5 203 66.0
unitig_46.g17936 Utricularia gibba HOM05D006598 ORTHO05D008132 2.8e-66 256.5 178 67.4
FAN20G3016 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.3e-63 247.7 134 83.6
HPP92_018786 Vanilla planifolia HOM05D006598 ORTHO05D008132 6.4e-63 245.4 163 68.7
AUR62039547 Chenopodium quinoa HOM05D006598 ORTHO05D008132 7.3e-59 231.9 256 52.7
Actinidia29823 Actinidia chinensis HOM05D006598 ORTHO05D008132 5.3e-57 225.7 156 69.2
Pp3c12_23400 Physcomitrium patens HOM05D006598 ORTHO05D008132 1.6e-53 214.2 285 44.6
HPP92_018785 Vanilla planifolia HOM05D006598 ORTHO05D008132 5.3e-49 199.1 152 65.1
TAR381G0844 Trochodendron aralioides HOM05D006598 ORTHO05D008132 1.3e-47 194.5 130 73.1
MD15G1027400 Malus domestica HOM05D006598 ORTHO05D008132 8.2e-42 175.3 90 86.7
Actinidia22543 Actinidia chinensis HOM05D006598 ORTHO05D008132 4.0e-41 172.9 144 61.8
Actinidia29824 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.7e-26 124.4 107 56.1
CSS0032599 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.7e-26 124.4 126 53.2
Nitab4.5_0000457g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 8.8e-20 102.1 72 66.7
MCO09G151 Micromonas commoda HOM05D006598 ORTHO05D008132 6.5e-15 85.9 197 33.5
HanXRQChr09g0268921 Helianthus annuus HOM05D006598 ORTHO05D008132 8.5e-15 85.5 70 62.9
CBR_g22328 Chara braunii HOM05D006598 ORTHO05D008132 5.2e-12 76.3 119 38.7


User provided reference genes

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