Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 6.4e-123 444.1 227 100.0
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 3.3e-119 431.8 227 96.9
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 2.6e-84 315.8 230 73.5
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.3e-83 313.5 229 72.1
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.3e-83 313.5 230 73.0
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 1.7e-83 313.2 230 71.7
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 8.4e-83 310.8 227 72.7
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 6.0e-81 304.7 228 73.2
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 7.9e-81 304.3 184 84.8
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 2.3e-80 302.8 184 83.2
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 9.6e-79 297.4 231 71.9
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 2.8e-78 295.8 204 77.5
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 6.2e-78 294.7 177 82.5
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 2.4e-77 292.7 189 79.4
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 5.3e-77 291.6 230 70.9
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 6.9e-77 291.2 227 71.8
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 6.9e-77 291.2 215 70.7
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 3.4e-76 288.9 217 71.9
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 5.8e-76 288.1 172 82.6
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 1.3e-75 287.0 230 69.1
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 2.2e-75 286.2 231 70.1
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 2.2e-75 286.2 231 70.1
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 6.5e-75 284.6 224 71.4
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.4e-74 283.5 185 78.9
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 1.9e-74 283.1 179 82.1
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.9e-74 283.1 177 83.1
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 1.2e-73 280.4 231 64.5
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 1.2e-73 280.4 177 80.8
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.2e-73 280.4 177 82.5
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 2.1e-73 279.6 235 65.1
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 1.0e-72 277.3 177 80.8
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.3e-72 276.9 177 81.9
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 1.3e-72 276.9 170 82.4
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 1.8e-72 276.6 191 75.9
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 1.1e-71 273.9 228 68.4
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.5e-71 273.5 165 84.8
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 1.9e-71 273.1 215 70.7
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 2.5e-71 272.7 231 67.1
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 3.3e-71 272.3 170 82.4
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 4.3e-71 271.9 234 66.2
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 4.3e-71 271.9 216 66.7
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 4.3e-71 271.9 177 78.5
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 9.6e-71 270.8 181 79.0
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 9.6e-71 270.8 233 67.8
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 9.6e-71 270.8 199 74.4
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 1.6e-70 270.0 228 65.4
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 1.6e-70 270.0 219 69.4
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 2.8e-70 269.2 163 82.8
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 8.2e-70 267.7 169 79.9
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 1.4e-69 266.9 214 67.8
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 1.4e-69 266.9 169 79.3
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 1.8e-69 266.5 181 77.3
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 3.1e-69 265.8 179 77.1
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 9.0e-69 264.2 170 78.8
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 1.2e-68 263.8 165 78.8
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 1.5e-68 263.5 177 75.1
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 1.5e-68 263.5 170 79.4
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.0e-68 263.1 170 80.0
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 2.0e-68 263.1 227 67.4
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 2.6e-68 262.7 207 68.6
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 3.4e-68 262.3 169 77.5
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 3.4e-68 262.3 170 80.0
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 4.5e-68 261.9 148 88.5
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 4.5e-68 261.9 177 75.1
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 4.5e-68 261.9 177 75.1
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 7.6e-68 261.2 177 75.7
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 7.6e-68 261.2 207 68.1
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 7.6e-68 261.2 218 66.1
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 1.0e-67 260.8 170 77.1
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.3e-67 260.4 229 65.9
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 1.7e-67 260.0 170 75.9
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 6.5e-67 258.1 227 65.2
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 1.1e-66 257.3 148 87.2
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.1e-66 257.3 161 79.5
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 1.4e-66 256.9 178 75.8
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.4e-66 256.9 179 77.1
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 2.5e-66 256.1 170 77.6
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 3.2e-66 255.8 230 66.1
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 4.2e-66 255.4 174 77.0
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 4.6e-65 251.9 171 76.6
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 6.1e-65 251.5 138 89.9
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 7.9e-65 251.1 168 76.2
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 7.9e-65 251.1 155 81.3
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 7.9e-65 251.1 155 81.3
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 1.0e-64 250.8 152 82.9
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.0e-64 250.8 237 60.8
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 1.8e-64 250.0 140 87.1
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.3e-64 249.6 177 72.9
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 2.3e-64 249.6 171 75.4
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 6.7e-64 248.1 184 70.7
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 1.5e-63 246.9 194 68.0
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 1.5e-63 246.9 140 86.4
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 1.9e-63 246.5 172 73.8
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 2.5e-63 246.1 166 72.9
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 2.5e-63 246.1 189 70.9
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 2.5e-63 246.1 140 85.7
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 7.4e-63 244.6 177 71.8
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.3e-62 243.8 227 59.0
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 1.3e-62 243.8 170 75.9
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 2.8e-62 242.7 156 78.8
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 8.2e-62 241.1 140 83.6
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 2.4e-61 239.6 221 59.7
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 4.1e-61 238.8 177 70.6
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 5.3e-61 238.4 166 74.7
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 9.0e-61 237.7 157 73.9
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 1.3e-59 233.8 165 75.2
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 1.7e-59 233.4 168 71.4
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 1.7e-59 233.4 163 75.5
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 3.8e-59 232.3 184 66.3
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 1.2e-57 227.3 172 66.3
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.0e-56 224.2 142 79.6
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 1.4e-56 223.8 138 79.7
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 2.3e-56 223.0 167 70.1
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 2.8e-54 216.1 168 64.3
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.8e-53 213.4 154 74.7
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 1.8e-53 213.4 216 56.0
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 1.2e-52 210.7 176 63.1
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.0e-51 207.6 171 68.4
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 8.5e-51 204.5 138 74.6
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 5.7e-47 191.8 166 60.8
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.0e-43 181.0 157 70.7
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 2.0e-39 166.8 140 60.7
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 2.2e-38 163.3 143 63.6
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 1.1e-37 161.0 130 64.6
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.1e-37 159.1 143 58.7
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 2.6e-36 156.4 137 61.3
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 4.5e-36 155.6 137 61.3
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 5.0e-35 152.1 81 86.4
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.1e-34 151.0 137 60.6
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 2.5e-34 149.8 112 72.3
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 1.2e-31 141.0 103 68.0
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 5.7e-31 138.7 137 54.0
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 9.8e-31 137.9 127 62.2
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 2.4e-29 133.3 151 57.0
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 5.9e-28 128.6 150 56.0
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 2.2e-27 126.7 138 47.8
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 6.5e-27 125.2 80 78.8
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 8.5e-27 124.8 97 66.0
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 8.5e-27 124.8 101 66.3
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 2.7e-25 119.8 98 66.3
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.6e-25 119.4 117 60.7
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 6.1e-25 118.6 98 69.4
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 8.0e-25 118.2 88 68.2
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 1.0e-24 117.9 82 72.0
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 1.0e-24 117.9 88 73.9
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 2.2e-22 110.2 150 49.3
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 1.4e-21 107.5 151 47.7
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 1.6e-20 104.0 70 72.9
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 1.0e-19 101.3 86 64.0
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 1.7e-19 100.5 69 72.5
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.7e-19 100.5 59 83.1
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 5.0e-19 99.0 146 48.6
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.1e-18 97.8 69 73.9
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 4.7e-17 92.4 56 75.0
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 3.7e-14 82.8 83 57.8
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 1.8e-13 80.5 117 50.4
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 4.1e-13 79.3 63 65.1
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 5.9e-12 75.5 139 38.1
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.0e-11 74.7 44 79.5
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 8.6e-11 71.6 44 81.8
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 2.5e-10 70.1 103 50.5
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.8e-09 66.6 57 63.2
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 4.7e-09 65.9 108 43.5
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 8.0e-09 65.1 36 83.3
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 1.4e-08 64.3 53 69.8
arahy.Tifrunner.gnm1.ann1.20SHP8 Arachis hypogaea HOM05D004245 ORTHO05D004783 1.7e-06 57.4 30 86.7
arahy.Tifrunner.gnm1.ann1.3ZQ4SN Arachis hypogaea HOM05D004245 ORTHO05D004783 1.7e-06 57.4 30 86.7
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.7e-06 57.4 47 61.7
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 2.2e-06 57.0 30 90.0
Eucgr.L03680 Eucalyptus grandis HOM05D004245 ORTHO05D004783 3.7e-06 56.2 106 40.6
unitig_85.g27240 Utricularia gibba HOM05D004245 ORTHO05D004783 6.4e-06 55.5 62 54.8


User provided reference genes

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