Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 6.9e-37 156.8 77 100.0
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 3.0e-16 88.2 52 80.8
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 1.5e-15 85.9 87 56.3
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 9.7e-15 83.2 40 95.0
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 1.3e-14 82.8 43 86.0
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 1.6e-14 82.4 40 92.5
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 1.6e-14 82.4 39 94.9
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 2.2e-14 82.0 40 90.0
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 2.2e-14 82.0 40 92.5
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.2e-14 82.0 40 92.5
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 2.2e-14 82.0 40 92.5
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 2.2e-14 82.0 39 92.3
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 2.8e-14 81.6 40 90.0
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 2.8e-14 81.6 40 90.0
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 3.7e-14 81.3 40 90.0
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 3.7e-14 81.3 40 90.0
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 3.7e-14 81.3 50 78.0
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 3.7e-14 81.3 40 90.0
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 4.8e-14 80.9 40 87.5
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 4.8e-14 80.9 40 87.5
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 6.3e-14 80.5 40 90.0
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 8.2e-14 80.1 40 87.5
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 8.2e-14 80.1 40 87.5
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 8.2e-14 80.1 39 89.7
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 8.2e-14 80.1 39 89.7
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 8.2e-14 80.1 39 89.7
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.1e-13 79.7 40 90.0
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 1.1e-13 79.7 39 89.7
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 1.4e-13 79.3 39 92.3
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 1.4e-13 79.3 40 87.5
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 1.8e-13 79.0 41 87.8
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.8e-13 79.0 40 90.0
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 1.8e-13 79.0 39 89.7
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.8e-13 79.0 39 89.7
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.8e-13 79.0 39 89.7
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 1.8e-13 79.0 39 89.7
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 2.4e-13 78.6 39 89.7
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 2.4e-13 78.6 39 87.2
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 3.1e-13 78.2 40 90.0
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 3.1e-13 78.2 40 87.5
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 3.1e-13 78.2 40 85.0
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 3.1e-13 78.2 40 87.5
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 5.3e-13 77.4 39 87.2
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 5.3e-13 77.4 39 87.2
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 5.3e-13 77.4 40 85.0
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 6.9e-13 77.0 39 84.6
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 6.9e-13 77.0 40 90.0
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 6.9e-13 77.0 39 84.6
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 9.1e-13 76.6 39 87.2
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 9.1e-13 76.6 40 85.0
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 9.1e-13 76.6 40 85.0
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.2e-12 76.3 40 80.0
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 1.5e-12 75.9 40 85.0
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.5e-12 75.9 39 82.1
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.5e-12 75.9 40 85.0
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.5e-12 75.9 39 87.2
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 1.5e-12 75.9 39 89.7
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.5e-12 75.9 40 82.5
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.5e-12 75.9 40 82.5
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.0e-12 75.5 39 84.6
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 2.0e-12 75.5 47 70.2
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 2.6e-12 75.1 40 87.5
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 2.6e-12 75.1 40 87.5
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 2.6e-12 75.1 40 87.5
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 2.6e-12 75.1 40 87.5
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 2.6e-12 75.1 39 87.2
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 2.6e-12 75.1 39 87.2
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 2.6e-12 75.1 40 87.5
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 3.4e-12 74.7 40 85.0
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 3.4e-12 74.7 40 82.5
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 3.4e-12 74.7 39 84.6
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 3.4e-12 74.7 39 87.2
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 4.5e-12 74.3 39 87.2
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.5e-12 74.3 39 84.6
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 4.5e-12 74.3 39 82.1
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 4.5e-12 74.3 40 87.5
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 4.5e-12 74.3 40 87.5
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 4.5e-12 74.3 40 87.5
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 4.5e-12 74.3 39 82.1
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 4.5e-12 74.3 39 87.2
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 5.9e-12 73.9 40 80.0
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 5.9e-12 73.9 39 84.6
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 5.9e-12 73.9 40 82.5
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 7.7e-12 73.6 40 82.5
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 1.0e-11 73.2 40 85.0
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 1.0e-11 73.2 40 85.0
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.0e-11 73.2 39 82.1
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 1.0e-11 73.2 40 82.5
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 1.0e-11 73.2 40 80.0
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 2.2e-11 72.0 40 77.5
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 4.2e-10 67.8 39 71.8
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 7.2e-10 67.0 39 74.4
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 9.4e-10 66.6 39 71.8
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.2e-09 66.2 39 71.8
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 1.0e-08 63.2 39 66.7
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 3.0e-08 61.6 39 61.5
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 1.1e-07 59.7 39 61.5
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 6.3e-06 53.9 39 56.4
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 6.3e-06 53.9 45 60.0
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 6.3e-06 53.9 25 92.0


User provided reference genes

Program Settings