Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 1.2e-52 209.5 102 100.0
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 8.5e-51 203.4 101 98.0
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 7.7e-44 180.3 104 88.5
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 2.8e-38 161.8 104 76.0
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 1.1e-37 159.8 104 75.0
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.8e-30 134.4 104 63.5
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.8e-30 134.4 104 63.5
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 4.8e-30 134.4 104 64.4
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 1.1e-29 133.3 104 60.6
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 3.1e-29 131.7 104 63.5
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 4.1e-29 131.3 104 63.5
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 7.0e-29 130.6 104 62.5
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 1.2e-28 129.8 104 58.7
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 2.0e-28 129.0 104 62.5
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 7.7e-28 127.1 92 63.0
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.0e-27 126.7 92 63.0
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 1.3e-27 126.3 92 64.1
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 2.3e-27 125.6 92 63.0
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.9e-27 125.2 92 63.0
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 2.9e-27 125.2 102 59.8
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 3.8e-27 124.8 104 60.6
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 5.0e-27 124.4 92 63.0
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.1e-26 123.2 104 59.6
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 1.5e-26 122.9 92 59.8
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.5e-26 122.9 104 60.6
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 1.5e-26 122.9 92 64.1
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 1.9e-26 122.5 105 61.9
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 1.9e-26 122.5 104 59.6
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 3.3e-26 121.7 102 58.8
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 5.5e-26 120.9 92 62.0
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 5.5e-26 120.9 92 59.8
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 7.2e-26 120.6 104 56.7
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 7.2e-26 120.6 104 58.7
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 7.2e-26 120.6 92 60.9
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 7.2e-26 120.6 104 58.7
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 7.2e-26 120.6 104 58.7
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 7.2e-26 120.6 105 53.3
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 9.5e-26 120.2 92 59.8
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 9.5e-26 120.2 104 58.7
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 9.5e-26 120.2 92 57.6
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 1.6e-25 119.4 92 63.0
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.1e-25 119.0 92 59.8
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 2.1e-25 119.0 91 57.1
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 2.8e-25 118.6 104 55.8
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 2.8e-25 118.6 104 57.7
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 3.6e-25 118.2 92 60.9
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 3.6e-25 118.2 104 56.7
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 4.7e-25 117.9 104 54.8
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 4.7e-25 117.9 92 60.9
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.0e-24 116.7 87 59.8
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.0e-24 116.7 87 59.8
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 1.0e-24 116.7 104 57.7
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 5.2e-24 114.4 92 57.6
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 6.8e-24 114.0 90 60.0
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 6.8e-24 114.0 92 60.9
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 1.5e-23 112.8 103 53.4
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 3.4e-23 111.7 92 62.0
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 4.4e-23 111.3 103 56.3
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 9.8e-23 110.2 92 57.6
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 9.8e-23 110.2 92 57.6
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 2.2e-22 109.0 92 57.6
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 3.7e-22 108.2 92 54.3
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 3.7e-22 108.2 92 54.3
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 4.9e-22 107.8 104 52.9
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 6.3e-22 107.5 101 53.5
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 1.4e-21 106.3 92 56.5
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 1.4e-21 106.3 92 54.3
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 1.4e-21 106.3 92 54.3
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 7.0e-21 104.0 92 51.1
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 9.2e-21 103.6 93 51.6
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 9.2e-21 103.6 92 54.3
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 1.6e-20 102.8 92 53.3
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 2.0e-20 102.4 92 53.3
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 2.7e-20 102.1 93 58.1
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 2.7e-20 102.1 93 58.1
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 2.7e-20 102.1 92 53.3
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 2.7e-20 102.1 92 53.3
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 5.9e-20 100.9 92 53.3
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 7.8e-20 100.5 92 52.2
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 1.7e-19 99.4 104 50.0
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 1.7e-19 99.4 90 51.1
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 3.8e-19 98.2 92 56.5
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 5.0e-19 97.8 92 51.1
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 2.5e-18 95.5 92 50.0
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 3.3e-18 95.1 92 48.9
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 3.3e-18 95.1 92 48.9
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 2.1e-17 92.4 103 47.6
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 4.7e-17 91.3 105 43.8
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 1.8e-16 89.4 92 47.8
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 1.8e-16 89.4 92 47.8
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 4.0e-16 88.2 92 48.9
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 5.2e-16 87.8 92 43.5
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.6e-15 85.5 104 44.2
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.4e-15 84.7 92 44.6
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 5.8e-15 84.3 92 45.7
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 9.8e-15 83.6 102 45.1
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 3.2e-13 78.6 100 38.0
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 2.0e-12 75.9 92 41.3
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 5.0e-11 71.2 78 41.0
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 8.6e-11 70.5 46 67.4
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.9e-10 69.3 51 56.9
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.9e-10 69.3 46 65.2
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.9e-10 69.3 105 39.0
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 9.5e-10 67.0 58 56.9
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 2.3e-08 62.4 103 36.9
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 4.4e-07 58.2 73 39.7
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 9.8e-07 57.0 56 48.2
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 8.3e-06 53.9 35 65.7


User provided reference genes

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