Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1446.8 698 100.0
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1160.6 689 80.8
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1157.5 696 79.7
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1149.8 691 78.3
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1147.1 683 79.9
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1145.6 696 77.3
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1144.0 691 78.9
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1143.3 696 78.6
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1140.9 691 77.9
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1140.9 693 77.1
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1139.8 691 78.1
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1137.9 691 78.6
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1136.7 687 78.9
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1136.3 691 78.6
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1136.3 691 78.6
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1134.4 691 79.7
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1133.2 691 76.7
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1132.9 691 77.9
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1129.0 696 78.0
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1129.0 691 77.6
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1128.6 693 78.4
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1127.9 697 77.5
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1124.0 697 76.5
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1122.1 691 77.9
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1119.8 691 76.6
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1119.0 696 77.3
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1118.6 691 76.7
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1118.2 685 78.0
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1116.7 686 77.6
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 0.0e+00 1115.5 693 76.9
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1115.1 691 77.1
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1112.4 687 77.4
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1110.9 693 75.3
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1107.4 688 76.3
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 0.0e+00 1106.7 846 67.5
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1099.3 682 76.2
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 0.0e+00 1099.0 691 75.1
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1092.8 680 78.5
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1091.3 684 75.0
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1090.5 697 76.2
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1089.3 712 73.6
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1085.1 770 69.2
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1084.7 686 76.5
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1083.9 696 72.8
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1083.9 696 73.1
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 0.0e+00 1083.2 693 74.3
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1082.8 696 72.0
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 0.0e+00 1078.9 710 72.4
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1076.6 696 73.1
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1075.8 726 70.7
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 9.5e-312 1072.8 696 71.8
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 9.5e-311 1069.7 683 72.9
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 9.5e-311 1069.7 696 74.7
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 2.1e-310 1068.5 687 72.5
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 3.6e-310 1067.8 697 72.9
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 4.7e-310 1067.4 690 73.5
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 8.0e-310 1066.6 688 72.1
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 1.8e-309 1065.4 688 72.5
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 3.1e-309 1064.7 691 71.9
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 4.0e-309 1064.3 693 72.3
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 2.0e-308 1062.0 695 74.4
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 2.6e-308 1061.6 638 77.4
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 4.4e-308 1060.8 697 72.3
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 1.3e-304 1049.3 687 71.5
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 1.9e-303 1045.4 659 74.4
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 1.9e-303 1045.4 689 71.8
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 4.7e-302 1040.8 696 70.8
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 6.2e-302 1040.4 654 74.6
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 1.1e-301 1039.6 691 71.1
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 1.1e-301 1039.6 692 71.2
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 1.8e-301 1038.9 689 71.0
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 1.8e-301 1038.9 638 77.6
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 1.8e-301 1038.9 689 71.4
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 3.1e-301 1038.1 680 72.2
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 2.0e-300 1035.4 682 71.3
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 5.8e-300 1033.9 682 71.3
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 1.3e-299 1032.7 689 70.7
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 2.2e-299 1031.9 689 70.4
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 1.0e-296 1023.1 682 71.0
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 1.0e-296 1023.1 682 71.0
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 1.0e-296 1023.1 682 71.0
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 6.2e-294 1013.8 839 60.7
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 3.4e-292 1008.1 635 76.5
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 9.9e-292 1006.5 691 69.6
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 1.9e-290 1002.3 692 68.6
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 2.8e-286 988.4 693 67.0
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 1.7e-283 979.2 693 69.4
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 4.6e-281 971.1 691 68.0
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 8.4e-275 950.3 689 70.0
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 9.0e-269 930.2 603 71.5
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 2.7e-265 918.7 638 68.0
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 3.8e-251 871.7 590 70.5
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 2.7e-249 865.5 620 66.3
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 5.9e-244 847.8 687 59.0
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 2.3e-240 835.9 693 58.7
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 3.6e-233 812.0 693 57.4
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 1.6e-212 743.4 515 70.1
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 7.1e-189 664.8 409 73.8
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 2.7e-180 636.3 379 80.7
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 5.8e-167 592.0 378 73.5
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.9e-158 563.1 373 71.8
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 1.8e-152 543.9 601 49.1
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 1.9e-138 497.3 576 46.7
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.0e-118 431.8 286 69.2
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 1.2e-79 302.0 719 31.3
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 4.3e-77 293.5 152 85.5
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 2.4e-72 277.7 245 59.2
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 3.6e-60 237.3 210 58.1
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 9.6e-29 132.9 71 87.3
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.6e-28 132.1 72 84.7
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 2.9e-25 121.3 65 81.5
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 7.9e-23 113.2 91 64.8
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.3e-20 105.9 70 68.6
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 3.7e-20 104.4 71 64.8
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 4.8e-20 104.0 64 71.9
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 5.3e-19 100.5 66 72.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 5.3e-19 100.5 66 72.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 5.3e-19 100.5 66 72.7
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 2.0e-18 98.6 70 64.3
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 8.5e-17 93.2 95 55.8
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 1.4e-16 92.4 103 48.5
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 9.7e-13 79.7 99 48.5
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.1e-11 74.3 52 65.4
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 1.0e-09 69.7 69 52.2
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 8.5e-09 66.6 64 53.1


User provided reference genes

Program Settings