Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p007279 Quercus lobata HOM05D007639 ORTHO05D009509 5.6e-239 831.2 681 100.0
QL09p028535 Quercus lobata HOM05D007639 ORTHO05D009509 1.7e-86 324.7 199 84.4
Cfa018449 Carpinus fangiana HOM05D007639 ORTHO05D009509 3.1e-64 250.8 193 68.4
Haze_17619 Corylus avellana HOM05D007639 ORTHO05D009509 3.1e-64 250.8 200 68.5
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 3.5e-60 237.3 303 45.9
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 5.1e-59 233.4 329 54.4
CiPaw.15G071600 Carya illinoinensis HOM05D007639 ORTHO05D009509 1.9e-58 231.5 205 62.0
Ciclev10003562m.g Citrus clementina HOM05D007639 ORTHO05D009509 9.7e-58 229.2 365 50.1
RcHm_v2.0_Chr6g0300361 Rosa chinensis HOM05D007639 ORTHO05D009509 6.5e-54 216.5 187 63.6
FvH4_2g40380 Fragaria vesca HOM05D007639 ORTHO05D009509 3.2e-53 214.2 187 62.6
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 4.2e-53 213.8 204 58.3
PGR031G3090 Punica granatum HOM05D007639 ORTHO05D009509 9.3e-53 212.6 194 59.8
Manes.05G164100 Manihot esculenta HOM05D007639 ORTHO05D009509 2.7e-52 211.1 184 62.5
TWI60G0667 Tripterygium wilfordii HOM05D007639 ORTHO05D009509 2.7e-52 211.1 179 65.4
Duzib093G1018 Durio zibethinus HOM05D007639 ORTHO05D009509 3.6e-52 210.7 195 59.5
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 4.6e-52 210.3 342 37.4
Cpa.g.sc207.2 Carica papaya HOM05D007639 ORTHO05D009509 6.1e-52 209.9 365 43.0
Prupe.1G585600 Prunus persica HOM05D007639 ORTHO05D009509 7.9e-52 209.5 163 68.7
MD15G1444300 Malus domestica HOM05D007639 ORTHO05D009509 1.3e-51 208.8 186 61.8
Dinv39377 Davidia involucrata HOM05D007639 ORTHO05D009509 1.9e-50 204.9 190 57.4
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.3e-50 204.1 341 42.8
CSS0043455 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 5.7e-50 203.4 198 58.1
ClCG05G019220 Citrullus lanatus HOM05D007639 ORTHO05D009509 1.3e-49 202.2 199 60.8
MELO3C003888.2 Cucumis melo HOM05D007639 ORTHO05D009509 1.3e-49 202.2 184 62.5
CSS0026781 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 1.6e-49 201.8 198 57.6
CsaV3_3G044860 Cucumis sativus L. HOM05D007639 ORTHO05D009509 2.8e-49 201.1 205 60.0
Gohir.D05G200100 Gossypium hirsutum HOM05D007639 ORTHO05D009509 3.7e-49 200.7 199 55.8
Gorai.009G205400 Gossypium raimondii HOM05D007639 ORTHO05D009509 8.2e-49 199.5 199 55.3
THA.LOC104813851 Tarenaya hassleriana HOM05D007639 ORTHO05D009509 1.4e-48 198.7 187 57.2
Sed0007352 Sechium edule HOM05D007639 ORTHO05D009509 3.1e-48 197.6 182 59.9
vmacro04826 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 7.7e-47 193.0 185 55.7
vmacro04988 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 7.7e-47 193.0 185 55.7
Sabra14G0029300 Salix brachista HOM05D007639 ORTHO05D009509 2.2e-46 191.4 177 59.9
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 1.1e-45 189.1 201 53.2
TAR625G1528 Trochodendron aralioides HOM05D007639 ORTHO05D009509 7.2e-45 186.4 206 51.9
BcaC07g38995 Brassica carinata HOM05D007639 ORTHO05D009509 1.2e-44 185.7 196 54.6
BolC8t49556H Brassica oleracea HOM05D007639 ORTHO05D009509 1.2e-44 185.7 196 54.6
Aa31LG7G3990 Aethionema arabicum HOM05D007639 ORTHO05D009509 2.7e-44 184.5 192 53.6
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 4.6e-44 183.7 235 47.2
C08p19350 Brassica napus HOM05D007639 ORTHO05D009509 6.1e-44 183.3 196 54.1
Eucgr.A00484 Eucalyptus grandis HOM05D007639 ORTHO05D009509 6.1e-44 183.3 205 50.7
BraA08t34924Z Brassica rapa HOM05D007639 ORTHO05D009509 1.0e-43 182.6 196 53.1
Nn4g24966 Nelumbo nucifera HOM05D007639 ORTHO05D009509 1.0e-43 182.6 206 50.0
PSO675G4860 Papaver somniferum HOM05D007639 ORTHO05D009509 1.4e-43 182.2 167 56.3
Thhalv10006776m.g Eutrema salsugineum HOM05D007639 ORTHO05D009509 2.3e-43 181.4 198 52.5
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 8.8e-43 179.5 372 43.3
Sp1g17190 Schrenkiella parvula HOM05D007639 ORTHO05D009509 1.1e-42 179.1 198 51.5
A08p29890 Brassica napus HOM05D007639 ORTHO05D009509 1.5e-42 178.7 207 50.2
CARHR019880 Cardamine hirsuta HOM05D007639 ORTHO05D009509 2.0e-42 178.3 193 51.8
AL1G31880 Arabidopsis lyrata HOM05D007639 ORTHO05D009509 4.8e-41 173.7 211 49.3
PSO541G4055 Papaver somniferum HOM05D007639 ORTHO05D009509 8.2e-41 172.9 173 52.0
AT1G19290 Arabidopsis thaliana HOM05D007639 ORTHO05D009509 1.1e-40 172.6 198 49.5
GSVIVG01009638001 Vitis vinifera HOM05D007639 ORTHO05D009509 2.4e-40 171.4 160 55.6
Carub.0001s1888 Capsella rubella HOM05D007639 ORTHO05D009509 3.1e-40 171.0 192 51.6
Solyc04g079850.2 Solanum lycopersicum HOM05D007639 ORTHO05D009509 6.9e-40 169.9 162 57.4
Ah.04g165440 Amaranthus hybridus HOM05D007639 ORTHO05D009509 1.5e-39 168.7 202 48.0
AUR62022372 Chenopodium quinoa HOM05D007639 ORTHO05D009509 2.6e-39 167.9 202 48.0
Lalb_Chr23g0275911 Lupinus albus HOM05D007639 ORTHO05D009509 7.7e-39 166.4 195 49.2
Sopen04g033420 Solanum pennellii HOM05D007639 ORTHO05D009509 1.7e-38 165.2 162 55.6
AUR62034326 Chenopodium quinoa HOM05D007639 ORTHO05D009509 6.5e-38 163.3 202 48.0
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.2e-37 161.0 334 44.0
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.2e-36 159.1 334 44.3
Peaxi162Scf00057g00149 Petunia axillaris HOM05D000909 ORTHO05D009509 2.1e-36 158.3 166 51.2
Ca_02594_v3 Cicer arietinum L. HOM05D007639 ORTHO05D009509 4.7e-36 157.1 190 47.9
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 7.9e-36 156.4 200 44.0
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 1.4e-35 155.6 202 48.0
Aqoxy6G01002 Aquilegia oxysepala HOM05D007639 ORTHO05D009509 3.9e-35 154.1 178 48.9
ATR0733G078 Amborella trichopoda HOM05D007639 ORTHO05D009509 1.1e-34 152.5 197 45.2
Oeu009601.2 Olea europaea HOM05D007639 ORTHO05D009509 1.1e-34 152.5 180 48.9
CAN.G371.124 Capsicum annuum HOM05D007639 ORTHO05D009509 7.4e-34 149.8 152 50.0
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 7.4e-34 149.8 200 42.0
Psat1g020640 Pisum sativum HOM05D007639 ORTHO05D009509 1.3e-33 149.1 191 46.6
DCAR_008778 Daucus carota HOM05D007639 ORTHO05D009509 4.1e-32 144.1 190 44.2
VMungo1309G2587 Vigna mungo HOM05D007639 ORTHO05D009509 7.0e-32 143.3 188 43.6
HPP92_006134 Vanilla planifolia HOM05D007639 ORTHO05D009509 4.5e-31 140.6 171 46.2
Phvul.009G213300 Phaseolus vulgaris HOM05D007639 ORTHO05D009509 5.9e-31 140.2 204 41.7
Medtr2g049740 Medicago truncatula HOM05D007639 ORTHO05D009509 7.7e-31 139.8 194 42.3
TPR.G34687 Trifolium pratense HOM05D007639 ORTHO05D009509 7.7e-31 139.8 189 44.4
Lj6g0022088 Lotus japonicus HOM05D007639 ORTHO05D009509 5.0e-30 137.1 190 43.2
Migut.L00762 Erythranthe guttata HOM05D007639 ORTHO05D009509 4.2e-29 134.0 137 55.5
Glyma.09G089200 Glycine max HOM05D007639 ORTHO05D009509 2.6e-26 124.8 178 41.6
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 2.1e-20 105.1 196 36.2
Lsat_1_v5_gn_4_37641 Lactuca sativa HOM05D007639 ORTHO05D009509 1.6e-15 89.0 262 40.8
CDE04G3788 Ceratophyllum demersum HOM05D007639 ORTHO05D009509 3.2e-13 81.3 131 34.4
Os05g0275100 Oryza sativa ssp. japonica HOM05D007639 ORTHO05D009509 4.2e-13 80.9 236 29.7
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.2e-09 68.6 132 30.3
CSS0022172 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 6.3e-09 67.0 145 30.3
HanXRQChr17g0537401 Helianthus annuus HOM05D007358 ORTHO05D009117 1.1e-08 66.2 129 27.9
Gohir.D11G070700 Gossypium hirsutum HOM05D007358 ORTHO05D009117 2.4e-08 65.1 128 29.7
Gorai.007G075800 Gossypium raimondii HOM05D007358 ORTHO05D009117 2.4e-08 65.1 128 29.7
Zm00001eb327830 Zea mays HOM05D007639 ORTHO05D009509 5.4e-08 63.9 159 32.7
Solyc03g007390.4 Solanum lycopersicum HOM05D007358 ORTHO05D009117 7.0e-08 63.5 179 24.6
Sopen03g003350 Solanum pennellii HOM05D007358 ORTHO05D009117 7.0e-08 63.5 179 24.6
CANSAT64G1792 Cannabis sativa HOM05D007358 ORTHO05D009117 9.2e-08 63.2 148 23.6
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 9.2e-08 63.2 167 28.1
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 1.2e-07 62.8 182 25.3
SEGI_14415 Sequoiadendron giganteum HOM05D006931 ORTHO05D009509 1.2e-07 62.8 196 27.0
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 2.7e-07 61.6 133 27.1
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 2.7e-07 61.6 184 26.6
TWI74G1032 Tripterygium wilfordii HOM05D007291 ORTHO05D009038 2.7e-07 61.6 123 33.3
Haze_09837 Corylus avellana HOM05D007390 ORTHO05D009114 3.5e-07 61.2 189 27.0
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 3.5e-07 61.2 139 30.2
SGA_v2.0_scaffold13G06360 Striga asiatica HOM05D007390 ORTHO05D009114 3.5e-07 61.2 176 27.3
THA.LOC104811670 Tarenaya hassleriana HOM05D007390 ORTHO05D009114 4.5e-07 60.8 167 30.5
BcaB08g35953 Brassica carinata HOM05D007390 ORTHO05D009114 5.9e-07 60.5 94 35.1
Migut.F01873 Erythranthe guttata HOM05D007358 ORTHO05D009117 5.9e-07 60.5 142 28.2
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 7.8e-07 60.1 148 23.6
CARHR269210 Cardamine hirsuta HOM05D007390 ORTHO05D009114 7.8e-07 60.1 170 26.5
Gohir.A11G066500 Gossypium hirsutum HOM05D007358 ORTHO05D009117 7.8e-07 60.1 127 28.3
Lsat_1_v5_gn_3_20581 Lactuca sativa HOM05D007358 ORTHO05D009117 7.8e-07 60.1 186 25.3
Aqoxy4G00642 Aquilegia oxysepala HOM05D007390 ORTHO05D009114 1.0e-06 59.7 180 26.7
Gorai.002G101000 Gossypium raimondii HOM05D007390 ORTHO05D009114 1.0e-06 59.7 91 37.4
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.0e-06 59.7 135 25.9
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.0e-06 59.7 135 25.9
GSVIVG01008360001 Vitis vinifera HOM05D007358 ORTHO05D009117 1.0e-06 59.7 133 27.1
PGSC0003DMG400009102 Solanum tuberosum HOM05D007358 ORTHO05D009117 1.3e-06 59.3 178 23.6
Thecc.07G011700 Theobroma cacao HOM05D007390 ORTHO05D009114 1.3e-06 59.3 175 27.4
CAN.G108.28 Capsicum annuum HOM05D007358 ORTHO05D009117 1.7e-06 58.9 183 25.7
AUR62017120 Chenopodium quinoa HOM05D007390 ORTHO05D009114 1.7e-06 58.9 161 29.2
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 1.7e-06 58.9 179 26.8
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.3e-06 58.5 163 25.2
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 2.3e-06 58.5 162 27.8
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 2.3e-06 58.5 162 27.8
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 2.3e-06 58.5 159 26.4
Carub.0008s1619 Capsella rubella HOM05D007390 ORTHO05D009114 2.9e-06 58.2 169 27.8
Haze_14729 Corylus avellana HOM05D007358 ORTHO05D009117 2.9e-06 58.2 129 27.9
PGR031G0714 Punica granatum HOM05D007390 ORTHO05D009114 2.9e-06 58.2 171 29.2
CDE04G1234 Ceratophyllum demersum HOM05D007358 ORTHO05D009117 3.8e-06 57.8 158 24.7
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 3.8e-06 57.8 144 25.7
Gohir.A01G092200 Gossypium hirsutum HOM05D007390 ORTHO05D009114 3.8e-06 57.8 91 37.4
Manes.15G146700 Manihot esculenta HOM05D007675 ORTHO05D009699 3.8e-06 57.8 128 28.9
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.8e-06 57.8 163 23.9
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 5.0e-06 57.4 152 26.3
Cfa014232 Carpinus fangiana HOM05D006931 ORTHO05D008782 5.0e-06 57.4 151 29.8
Cc09_g03920 Coffea canephora HOM05D007358 ORTHO05D009117 5.0e-06 57.4 151 27.8
Nitab4.5_0000080g0200 Nicotiana tabacum HOM05D007358 ORTHO05D009117 5.0e-06 57.4 179 22.3
Potri.017G071600 Populus trichocarpa HOM05D007358 ORTHO05D009117 5.0e-06 57.4 153 22.9
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.0e-06 57.4 178 23.6
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 6.6e-06 57.0 159 28.9
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 6.6e-06 57.0 136 27.2
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 8.6e-06 56.6 96 34.4
CARHR261620 Cardamine hirsuta HOM05D007358 ORTHO05D009117 8.6e-06 56.6 129 29.5
Thecc.02G030300 Theobroma cacao HOM05D007675 ORTHO05D009699 8.6e-06 56.6 196 26.5


User provided reference genes

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