Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 0.0e+00 2787.3 1399 100.0
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 0.0e+00 1717.6 1399 64.8
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 0.0e+00 1657.5 1410 62.2
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 0.0e+00 1654.0 1476 61.4
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 0.0e+00 1411.7 1430 54.5
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 0.0e+00 1372.5 1407 53.0
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 0.0e+00 1341.6 1428 52.0
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 0.0e+00 1308.9 1423 49.8
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 0.0e+00 1302.0 1418 49.6
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1273.5 1423 50.5
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 0.0e+00 1259.6 1427 49.6
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 1244.2 1428 49.2
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 0.0e+00 1223.4 1432 48.7
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 1213.0 1455 48.0
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 0.0e+00 1204.5 1405 49.2
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 0.0e+00 1188.7 1267 51.7
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1180.6 1428 46.9
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 0.0e+00 1169.5 1453 46.0
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 0.0e+00 1134.4 1428 47.3
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 0.0e+00 1106.7 1424 47.3
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 9.6e-312 1074.7 1427 43.4
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 3.6e-309 1065.4 1431 44.7
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 1.7e-306 1056.6 1423 43.6
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 1.2e-304 1050.4 1441 43.3
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 3.5e-304 1048.9 1439 45.4
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 1.0e-295 1020.8 1374 43.2
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 9.5e-294 1014.2 1431 42.3
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 9.5e-294 1014.2 1422 42.5
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 8.0e-293 1011.1 1434 43.2
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 3.4e-291 1005.7 1380 43.9
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 5.4e-289 998.4 1428 42.8
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 5.6e-286 988.4 1428 41.1
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 4.7e-277 958.7 1440 40.6
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 1.3e-274 950.7 1426 42.8
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 2.9e-274 949.5 1364 43.0
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 5.1e-271 938.7 1430 40.0
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 1.6e-269 933.7 1413 39.1
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 1.6e-269 933.7 1439 39.9
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 6.2e-261 905.2 1432 40.0
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 9.0e-260 901.4 1416 39.2
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 4.5e-259 899.0 1423 39.8
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 9.9e-259 897.9 1416 38.3
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 2.9e-258 896.3 1437 40.8
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 4.2e-257 892.5 1421 38.6
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 4.6e-256 889.0 1250 42.6
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 6.2e-253 878.6 1437 39.3
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 1.1e-244 851.3 1391 39.3
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 1.5e-243 847.4 1436 38.4
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 3.2e-241 839.7 1213 40.8
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 7.9e-240 835.1 1426 38.8
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 9.7e-238 828.2 1427 37.6
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 2.4e-236 823.5 1417 37.1
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 5.3e-236 822.4 1404 37.7
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 1.1e-233 814.7 1423 36.8
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 5.1e-231 805.8 1408 37.6
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 2.0e-227 793.9 1169 40.4
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 5.5e-225 785.8 1412 36.8
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 8.8e-223 778.5 1208 39.2
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 2.0e-222 777.3 1412 36.2
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 2.8e-221 773.5 1416 35.7
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 4.1e-220 769.6 1411 36.3
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 9.1e-220 768.5 1400 36.8
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 9.1e-220 768.5 1420 36.0
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 2.6e-219 766.9 1398 36.7
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 2.2e-218 763.8 1437 36.3
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 3.8e-218 763.1 1412 36.4
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 5.0e-218 762.7 1404 36.7
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 1.1e-217 761.5 1417 36.6
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 1.4e-217 761.1 1406 37.1
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 2.5e-217 760.4 1418 35.9
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 1.4e-215 754.6 1403 36.5
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 3.7e-213 746.5 1413 35.2
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 7.2e-209 732.3 855 48.3
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.3e-207 727.2 1312 35.6
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 5.2e-199 699.5 997 42.2
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 2.6e-198 697.2 1426 34.4
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 5.9e-195 686.0 1109 39.1
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 1.7e-194 684.5 1254 37.2
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 1.1e-193 681.8 1535 33.0
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 3.6e-192 676.8 1046 40.6
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 1.1e-185 655.2 1521 33.3
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 8.3e-165 585.9 964 37.3
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 2.0e-142 511.5 1454 30.0
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 2.1e-136 491.5 1417 28.9
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 6.2e-136 490.0 1413 28.7
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 1.5e-134 485.3 818 38.5
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 7.6e-126 456.4 656 41.9
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 3.3e-121 441.0 403 55.8
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 6.3e-112 410.2 414 54.6
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.9e-110 403.7 359 57.9
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 8.2e-104 383.3 477 49.3
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 2.8e-96 358.2 442 45.5
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.2e-91 342.8 364 51.6
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.6e-91 342.4 760 32.6
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 3.6e-91 341.3 370 48.4
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.5e-89 335.9 275 60.4
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.6e-78 299.3 259 57.1
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 2.0e-73 282.3 273 54.9
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 2.6e-73 282.0 407 43.2
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 1.2e-70 273.1 372 44.9
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 3.3e-68 265.0 381 41.7
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 3.5e-62 245.0 474 35.0
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 1.0e-61 243.4 655 29.9
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.7e-61 242.7 211 57.8
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 2.3e-61 242.3 1284 23.2
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 1.1e-60 240.0 607 30.0
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 3.9e-53 214.9 406 38.7
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.1e-50 206.8 670 25.5
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 2.4e-47 195.7 276 43.1
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 1.2e-46 193.4 1042 22.7
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 1.5e-41 176.4 228 40.8
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 2.6e-41 175.6 516 28.3
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 7.6e-41 174.1 122 68.0
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 2.2e-32 146.0 171 47.4
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 5.1e-29 134.8 207 36.2
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 7.3e-28 131.0 275 36.0
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 4.5e-25 121.7 200 35.0
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.7e-24 119.8 218 36.7
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 2.2e-24 119.4 586 24.4
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 3.7e-19 102.1 57 78.9
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 7.6e-17 94.4 295 28.1
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 1.1e-15 90.5 51 78.4
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 1.2e-14 87.0 217 30.4
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 1.8e-13 83.2 546 22.9
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 2.5e-12 79.3 242 27.3
AagrBONN_evm.TU.Sc2ySwM_368.213 Anthoceros agrestis HOM05D014773 ORTHO05D007236 1.4e-10 73.6 376 23.7
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 6.5e-08 64.7 65 50.8
MBI16_g32432_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 2.1e-06 59.7 67 46.3


User provided reference genes

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