Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 2324.3 1234 100.0
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1880.5 1232 79.8
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1767.3 1231 75.6
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1703.7 1231 73.2
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1695.6 1232 72.1
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1692.2 1240 71.4
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1684.8 1231 72.3
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1652.9 1226 71.1
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1648.3 1237 70.2
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1639.4 1242 69.8
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1620.9 1152 72.1
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1616.7 1232 69.0
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1605.1 1241 68.3
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1595.5 1254 68.7
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1594.3 1233 68.6
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1593.9 1224 69.2
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1589.7 1239 67.7
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1586.2 1157 71.7
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1586.2 1162 71.3
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1572.0 1243 67.3
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1571.6 1232 68.7
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1562.7 1154 69.4
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1561.6 1235 68.9
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1560.4 1232 68.0
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1555.8 1196 69.6
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1555.0 1231 68.2
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1554.7 1236 68.4
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1549.3 1221 67.4
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1545.4 1160 70.9
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1541.9 1225 65.6
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1541.6 1153 69.5
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1538.5 1158 68.7
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1537.3 1201 69.3
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1537.3 1246 67.0
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1533.9 1155 68.7
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1530.8 1233 66.6
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1526.1 1159 69.0
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1526.1 1159 69.0
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1518.8 1150 68.3
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1518.1 1150 68.2
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1517.3 1150 68.4
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1516.5 1150 68.4
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1511.1 1158 69.2
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1510.4 1253 65.8
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1509.6 1237 66.0
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1509.2 1156 69.2
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1503.4 1231 64.6
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1499.6 1244 64.2
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1492.2 1203 68.7
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1491.9 1247 64.7
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1488.4 1229 64.0
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1485.7 1229 63.8
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1483.0 1152 66.9
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1481.8 1155 67.0
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1479.9 1153 66.3
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1479.2 1164 66.0
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1476.1 1246 63.5
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1473.4 1155 66.3
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1469.1 1236 64.6
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1458.0 1154 66.1
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1443.7 1229 62.7
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1425.6 1136 66.3
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1409.0 1206 61.9
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1406.7 1075 67.7
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1403.3 1088 67.8
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1387.5 1132 65.4
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 1387.5 1123 65.4
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 0.0e+00 1386.3 955 73.0
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1379.8 1152 63.5
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1369.4 1156 63.1
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 0.0e+00 1367.1 957 73.0
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1366.7 1090 66.3
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1354.3 926 75.5
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1350.1 1121 62.9
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1340.5 1170 60.1
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 0.0e+00 1333.5 1032 68.3
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1330.1 1160 61.5
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1321.6 959 71.1
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 0.0e+00 1320.8 1207 61.6
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1320.4 1242 58.5
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1315.8 1070 67.6
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 0.0e+00 1311.6 980 68.1
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1311.2 953 71.5
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 0.0e+00 1305.0 1126 61.5
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 0.0e+00 1300.0 956 68.5
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 0.0e+00 1299.6 956 69.1
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 0.0e+00 1280.4 1134 60.7
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 0.0e+00 1275.4 953 67.9
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1261.9 1108 60.8
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1250.7 1160 58.0
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1230.3 1075 61.3
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1229.9 950 67.2
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1163.7 1049 60.3
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 0.0e+00 1153.7 1049 61.6
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 0.0e+00 1149.8 1119 57.2
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 0.0e+00 1138.3 886 65.5
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 0.0e+00 1076.6 998 57.9
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 2.5e-306 1055.8 1053 55.8
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 3.0e-283 979.2 1253 50.9
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 2.7e-260 902.9 1133 47.0
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 3.1e-248 862.8 844 56.6
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 2.2e-238 830.1 1104 45.2
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 2.9e-238 829.7 1096 44.3
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 4.1e-216 756.1 1119 42.2
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 1.4e-187 661.4 531 62.0
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.7e-185 654.4 591 58.7
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 4.7e-180 636.3 699 54.6
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.4e-171 608.2 742 47.8
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 2.2e-169 600.9 461 68.3
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 2.8e-124 451.1 1362 29.9
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 3.2e-112 411.0 331 65.9
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 3.2e-112 411.0 331 65.9
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 3.2e-112 411.0 331 65.9
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 1.2e-98 365.9 315 60.6
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 8.0e-95 353.2 204 81.9
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 8.0e-87 326.6 180 86.7
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 5.4e-83 313.9 233 70.0
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 5.4e-83 313.9 233 70.0
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 4.7e-79 300.8 256 63.7
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 1.4e-75 289.3 172 76.2
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 3.2e-75 288.1 154 86.4
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 1.2e-69 269.6 151 82.8
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 7.6e-69 266.9 156 76.9
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-60 239.2 126 84.9
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 6.4e-60 237.3 182 71.4
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 1.3e-52 213.0 185 62.2
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 5.1e-49 201.1 175 62.3
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.1e-48 199.9 218 52.3
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 3.8e-44 184.9 110 77.3
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 1.4e-43 183.0 98 86.7
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 1.8e-41 176.0 263 40.3
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 6.7e-41 174.1 298 36.2
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.4e-27 129.8 143 51.0
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 9.4e-27 127.1 98 68.4
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 2.1e-26 125.9 175 48.0
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 3.3e-24 118.6 220 40.5
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 4.3e-24 118.2 72 80.6
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.9e-21 107.8 268 29.5
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.5e-20 104.4 276 26.8
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.5e-19 101.3 277 28.5
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.4e-19 100.5 285 28.4
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.4e-19 100.5 277 28.5
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.2e-18 100.1 289 27.3
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.7e-18 98.2 275 28.4
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.0e-17 97.1 297 28.6
CAN.G371.43 Capsicum annuum HOM05D004348 ORTHO05D006191 1.8e-17 96.3 198 40.4
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.3e-17 95.9 284 28.2
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.3e-17 95.9 268 26.9
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 6.7e-17 94.4 278 28.8
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.8e-17 94.0 281 27.8
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 2.6e-16 92.4 277 27.4
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.3e-16 92.0 302 26.2
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 4.8e-15 88.2 76 60.5
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.0e-13 82.8 199 33.2
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 2.0e-13 82.8 46 76.1
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 1.7e-12 79.7 55 69.1
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.9e-12 79.0 302 22.8
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 5.0e-12 78.2 268 28.0
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 5.0e-12 78.2 296 22.3
Mapoly0120s0019 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.2e-11 75.5 217 27.2
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 4.2e-11 75.1 294 24.5
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 4.7e-10 71.6 317 22.7
Cfa023648 Carpinus fangiana HOM05D012225 ORTHO05D125365 1.0e-09 70.5 263 24.0
Mapoly0062s0059 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.8e-09 69.7 177 29.9
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.8e-09 67.4 152 28.9
Psat0s4914g0040 Pisum sativum HOM05D001376 ORTHO05D003384 8.8e-09 67.4 53 69.8
Lsat_1_v5_gn_9_17240 Lactuca sativa HOM05D004348 ORTHO05D006191 1.1e-08 67.0 64 57.8
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 2.6e-08 65.9 277 24.5
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 1.3e-07 63.5 155 29.7
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 1.7e-07 63.2 38 71.1
Mapoly0016s0166 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.8e-07 62.4 202 25.2
Pp3c2_2170 Physcomitrium patens HOM05D002195 ORTHO05D315015 3.7e-07 62.0 251 24.3
Aa31LG2G16190 Aethionema arabicum HOM05D004348 ORTHO05D006191 1.8e-06 59.7 32 81.2
Cfa026732 Carpinus fangiana HOM05D012225 ORTHO05D124966 7.0e-06 57.8 255 22.7


User provided reference genes

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