Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 4.2e-133 478.0 240 100.0
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 4.2e-101 371.7 244 77.0
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 4.2e-101 371.7 244 77.0
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.8e-99 366.3 244 77.0
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 3.0e-91 339.0 243 68.7
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.6e-87 326.6 243 67.1
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 3.5e-87 325.5 246 68.7
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 5.0e-86 321.6 243 65.0
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.8e-84 315.8 244 66.4
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 5.2e-83 311.6 254 64.2
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.2e-82 310.5 244 63.9
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 7.5e-82 307.8 249 61.8
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 9.8e-82 307.4 238 64.7
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.3e-81 307.0 250 62.8
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 2.9e-81 305.8 242 63.2
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.4e-80 302.8 246 62.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.4e-80 302.8 240 63.3
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.4e-80 301.6 245 64.9
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.4e-80 301.6 245 64.9
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 5.4e-80 301.6 246 62.2
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 9.2e-80 300.8 246 64.2
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.5e-79 298.9 243 64.6
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 3.5e-79 298.9 241 63.5
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.0e-78 297.4 241 65.6
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 5.0e-78 295.0 246 63.4
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 5.0e-78 295.0 246 61.4
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 8.6e-78 294.3 244 61.1
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.1e-77 293.9 244 61.5
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.5e-77 293.5 244 61.9
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.5e-77 293.5 246 62.6
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.9e-77 293.1 204 70.6
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.9e-77 293.1 243 60.9
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 3.3e-77 292.4 244 61.1
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 3.3e-77 292.4 246 62.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 4.3e-77 292.0 234 62.4
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.6e-77 291.6 246 62.2
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 5.6e-77 291.6 241 63.1
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 9.5e-77 290.8 175 78.9
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 9.5e-77 290.8 246 62.6
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 9.5e-77 290.8 242 61.6
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 9.5e-77 290.8 244 60.2
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.2e-76 290.4 251 59.8
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.2e-76 290.4 241 62.2
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.2e-76 290.4 243 60.5
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.6e-76 290.0 240 61.2
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.6e-76 290.0 241 61.4
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 2.1e-76 289.7 246 60.6
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 4.7e-76 288.5 236 61.9
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 4.7e-76 288.5 248 60.1
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 4.7e-76 288.5 244 59.8
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 3.1e-75 285.8 238 63.4
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 6.8e-75 284.6 244 59.0
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.5e-74 283.5 162 83.3
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 2.0e-74 283.1 238 60.1
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 4.4e-74 282.0 244 59.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.4e-74 282.0 243 60.5
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 4.4e-74 282.0 244 59.0
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.3e-73 280.4 243 60.5
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.3e-73 280.4 244 60.2
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.7e-73 280.0 179 74.3
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.2e-73 279.6 242 60.3
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 2.2e-73 279.6 244 58.6
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.9e-73 279.3 179 73.7
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.9e-73 278.5 245 58.0
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 6.4e-73 278.1 245 60.8
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.4e-72 276.9 231 62.8
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.4e-72 276.2 184 72.8
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 3.2e-72 275.8 248 58.1
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 3.2e-72 275.8 179 72.6
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 4.1e-72 275.4 229 61.1
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 9.2e-72 274.2 253 55.7
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.1e-71 273.1 242 59.9
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.7e-71 272.7 242 58.7
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 6.0e-71 271.6 179 70.4
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 6.0e-71 271.6 242 58.7
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.0e-70 270.8 240 58.3
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.0e-70 270.8 255 55.3
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 3.0e-70 269.2 235 60.0
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.9e-70 268.9 200 67.0
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 8.6e-70 267.7 237 59.1
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.5e-69 266.9 237 59.5
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.9e-69 266.5 240 57.5
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.9e-69 266.5 243 58.8
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-69 266.2 177 73.4
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.3e-69 265.8 242 58.3
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 2.1e-68 263.1 236 58.5
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.1e-68 263.1 240 56.7
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 3.6e-68 262.3 248 56.0
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 4.7e-68 261.9 243 57.2
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 4.7e-68 261.9 241 58.1
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 4.7e-68 261.9 240 57.1
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 4.7e-68 261.9 240 55.8
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 8.1e-68 261.2 245 55.9
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 8.1e-68 261.2 186 65.6
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.1e-67 260.8 243 57.6
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.4e-67 260.4 224 61.6
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-67 260.4 224 61.6
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.8e-67 260.0 238 58.0
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.8e-67 260.0 238 58.0
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.8e-67 260.0 243 57.2
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.1e-67 259.2 238 58.0
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 3.1e-67 259.2 242 56.6
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 4.0e-67 258.8 232 57.3
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 5.2e-67 258.5 237 58.6
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 5.2e-67 258.5 254 52.8
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 8.9e-67 257.7 177 68.9
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.5e-66 256.9 241 57.7
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.5e-66 256.9 241 57.7
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.0e-66 256.5 254 52.0
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 2.6e-66 256.1 201 62.7
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 7.6e-66 254.6 238 56.3
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 4.9e-65 251.9 230 57.4
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.9e-64 250.0 234 55.1
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 5.4e-64 248.4 178 65.2
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 5.4e-64 248.4 241 57.7
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 7.1e-64 248.1 246 54.1
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 9.2e-64 247.7 177 66.7
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.2e-63 247.3 225 56.4
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 7.8e-63 244.6 175 64.6
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 2.3e-62 243.0 208 59.6
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.1e-62 241.9 183 62.8
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.5e-61 240.4 150 76.0
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.3e-61 239.2 163 71.2
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 9.6e-61 237.7 225 55.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 4.0e-59 232.3 190 57.9
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 8.9e-59 231.1 211 54.0
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.9e-58 227.6 146 74.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.9e-57 226.1 241 50.2
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 4.9e-57 225.3 226 54.0
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.9e-57 225.3 183 60.1
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.4e-56 223.8 229 49.8
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.9e-56 223.4 206 58.3
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.9e-56 223.4 241 48.1
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.2e-56 222.6 171 61.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.5e-55 219.2 193 57.0
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 7.8e-55 218.0 180 58.3
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.0e-54 216.1 200 56.0
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-53 214.2 164 67.7
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.8e-51 206.8 251 43.8
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 3.2e-48 196.1 165 64.2
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.5e-47 192.6 132 68.2
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.7e-44 182.6 146 65.8
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.3e-41 174.1 111 74.8
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.6e-36 157.1 106 67.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 6.9e-35 151.8 212 40.6
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.2e-33 146.7 230 39.6
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 5.5e-32 142.1 153 47.7
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 9.7e-29 131.3 161 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 4.8e-28 129.0 174 37.4
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 6.9e-27 125.2 156 39.7
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-24 117.5 76 72.4
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.5e-18 97.4 111 50.5
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 2.2e-17 93.6 86 54.7
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.9e-16 90.5 150 36.7
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.6e-13 80.1 87 41.4
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.4e-06 57.8 54 44.4
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.3e-06 57.0 51 47.1


User provided reference genes

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