Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 9.5e-118 426.8 206 100.0
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 5.3e-84 314.7 202 78.7
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 1.2e-83 313.5 202 77.7
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 1.2e-83 313.5 202 77.7
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 1.3e-77 293.5 210 70.5
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 3.0e-71 272.3 208 65.4
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 1.8e-68 263.1 208 63.9
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 3.4e-67 258.8 208 63.5
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 5.9e-67 258.1 209 62.7
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 2.5e-65 252.7 210 61.0
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 3.6e-64 248.8 199 62.8
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 3.6e-64 248.8 214 62.1
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 7.9e-64 247.7 209 59.8
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 2.3e-63 246.1 204 61.8
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 2.3e-63 246.1 200 62.0
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 4.4e-62 241.9 200 60.0
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 5.7e-62 241.5 215 59.1
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 7.4e-62 241.1 207 59.4
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 2.8e-61 239.2 215 58.6
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 2.8e-61 239.2 215 58.1
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 4.8e-61 238.4 209 61.2
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 2.0e-59 233.0 201 59.7
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 2.6e-59 232.6 216 58.3
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 4.5e-59 231.9 202 58.9
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 7.7e-59 231.1 207 60.9
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.0e-58 230.7 209 57.9
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 1.7e-58 229.9 209 57.4
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 1.7e-58 229.9 206 59.2
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 1.7e-58 229.9 206 59.2
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 3.8e-58 228.8 210 60.0
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 1.4e-57 226.9 215 57.2
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 5.5e-57 224.9 208 56.7
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 2.1e-56 223.0 209 55.5
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 1.8e-55 219.9 207 55.1
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 3.9e-55 218.8 206 53.9
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 1.1e-54 217.2 210 57.6
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 1.5e-54 216.9 206 54.4
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 5.7e-54 214.9 206 58.3
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 5.7e-54 214.9 206 53.9
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 5.7e-54 214.9 207 53.1
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 9.7e-54 214.2 202 54.5
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 1.3e-53 213.8 219 54.8
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 1.3e-53 213.8 207 56.0
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 1.7e-53 213.4 206 53.9
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 2.8e-53 212.6 210 54.8
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 4.8e-53 211.8 206 56.3
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 4.8e-53 211.8 207 54.1
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 6.3e-53 211.5 210 57.1
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 1.4e-52 210.3 210 54.8
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 3.5e-51 205.7 204 55.4
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 5.9e-51 204.9 195 55.4
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 7.7e-51 204.5 205 49.8
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 5.0e-50 201.8 205 48.8
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 8.5e-50 201.1 210 53.3
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 1.1e-49 200.7 208 53.4
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 3.2e-49 199.1 158 62.7
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 4.2e-49 198.7 225 49.8
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 4.2e-49 198.7 198 56.6
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 7.2e-49 198.0 203 49.3
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 3.6e-48 195.7 197 54.8
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 4.7e-48 195.3 209 53.1
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 4.7e-48 195.3 205 50.2
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 1.0e-47 194.1 213 49.8
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 4.0e-47 192.2 206 51.5
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 1.2e-46 190.7 207 48.3
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 2.6e-46 189.5 198 48.5
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 2.6e-46 189.5 198 49.5
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 7.5e-46 188.0 205 49.3
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 3.7e-45 185.7 208 48.6
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 2.7e-43 179.5 222 47.7
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 1.0e-42 177.6 229 45.4
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 1.7e-42 176.8 195 48.2
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 5.5e-41 171.8 201 45.3
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 1.6e-40 170.2 202 48.0
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 1.4e-39 167.2 216 44.9
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 3.4e-38 162.5 210 47.1
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 9.8e-38 161.0 217 43.8
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 1.3e-37 160.6 219 43.8
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 2.2e-37 159.8 203 43.3
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.8e-37 159.5 216 44.9
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 4.8e-37 158.7 225 42.7
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 4.8e-37 158.7 209 44.5
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 1.2e-35 154.1 202 42.6
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.0e-35 153.3 213 43.7
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 7.7e-35 151.4 196 45.4
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 3.8e-34 149.1 200 43.5
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 8.6e-34 147.9 171 46.2
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 1.9e-33 146.7 211 42.7
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 2.5e-33 146.4 198 43.9
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 5.5e-33 145.2 196 43.4
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 7.2e-33 144.8 208 43.8
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 2.8e-32 142.9 196 43.4
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 3.6e-32 142.5 198 42.4
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 4.7e-32 142.1 196 42.9
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 4.7e-32 142.1 196 42.9
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 6.1e-32 141.7 197 43.1
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 8.0e-32 141.4 136 50.0
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 1.4e-31 140.6 194 42.3
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 2.3e-31 139.8 206 42.2
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 2.0e-30 136.7 197 42.6
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 5.7e-30 135.2 207 40.1
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 5.7e-30 135.2 209 43.1
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 7.5e-30 134.8 169 49.1
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 1.3e-29 134.0 166 45.2
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 2.8e-29 132.9 209 41.6
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 3.7e-29 132.5 184 43.5
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 1.6e-27 127.1 212 43.4
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 4.3e-25 119.0 196 40.8
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 4.3e-25 119.0 166 43.4
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 7.3e-25 118.2 216 39.8
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 7.3e-25 118.2 216 39.8
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 4.7e-24 115.5 212 37.7
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 2.0e-22 110.2 216 38.0
Duzib093G2157 Durio zibethinus HOM05D006157 ORTHO05D007826 2.9e-21 106.3 92 59.8
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 3.0e-18 96.3 310 29.0
FvH4_2g34701 Fragaria vesca HOM05D006157 ORTHO05D007826 3.6e-16 89.4 114 47.4
CSS0005922 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 2.2e-13 80.1 148 35.8
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 2.9e-13 79.7 162 33.3
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 1.1e-12 77.8 164 33.5
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 1.6e-11 73.9 191 32.5
HPP92_027520 Vanilla planifolia HOM05D006157 ORTHO05D007826 6.0e-11 72.0 148 35.1
Zm00001eb315050 Zea mays HOM05D006157 ORTHO05D007826 2.1e-08 63.5 233 27.0
Os09g0460100 Oryza sativa ssp. japonica HOM05D006157 ORTHO05D007826 2.6e-06 56.6 215 24.7
SalBow7G2854 Salvia bowleyana HOM05D008060 ORTHO05D003608 3.4e-06 56.2 55 52.7


User provided reference genes

Program Settings