Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 3.5e-161 571.6 303 100.0
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 7.5e-111 404.4 323 74.9
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 5.0e-107 391.7 317 72.9
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 5.0e-107 391.7 317 72.9
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.7e-102 375.6 316 71.8
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.2e-95 354.0 329 65.0
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 3.7e-94 349.0 342 63.7
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 6.3e-94 348.2 321 64.2
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 2.3e-91 339.7 310 67.4
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 5.0e-91 338.6 322 63.7
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 5.6e-90 335.1 322 62.7
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.0e-87 326.6 313 63.3
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 5.7e-87 325.1 325 62.8
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 2.9e-86 322.8 311 64.6
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 6.4e-86 321.6 320 62.5
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 1.4e-85 320.5 325 61.8
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 1.4e-85 320.5 334 60.2
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 5.4e-85 318.5 325 60.9
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.2e-84 317.4 324 61.4
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.0e-84 316.6 307 64.2
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.5e-84 315.8 309 63.8
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 5.9e-84 315.1 325 61.5
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.0e-83 314.3 315 62.5
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.9e-82 310.1 307 63.2
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 7.3e-82 308.1 288 65.3
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 5.2e-80 302.0 346 58.1
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.6e-79 299.7 313 60.1
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 9.8e-79 297.7 305 59.0
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 2.9e-78 296.2 317 57.4
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 4.9e-78 295.4 309 59.2
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.3e-78 294.7 319 59.6
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.1e-77 294.3 324 58.3
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.2e-77 292.7 324 59.0
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 3.2e-77 292.7 306 58.5
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 5.4e-77 292.0 322 59.6
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 3.5e-76 289.3 301 60.8
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 6.0e-76 288.5 306 61.1
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.0e-75 287.7 310 57.4
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.0e-75 287.7 307 60.3
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.9e-74 283.5 291 59.5
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 2.5e-74 283.1 310 58.1
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 4.7e-73 278.9 311 58.5
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 8.1e-73 278.1 252 63.5
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.4e-72 277.3 305 56.7
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 1.9e-69 266.9 313 54.6
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.4e-69 266.5 312 55.8
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 2.4e-69 266.5 254 61.4
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 3.2e-69 266.2 301 57.1
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 4.1e-69 265.8 328 54.6
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 2.1e-68 263.5 269 59.9
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 1.5e-66 257.3 262 59.5
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 2.5e-66 256.5 307 55.0
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.6e-65 253.8 285 57.2
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.1e-65 251.5 282 57.1
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 1.8e-64 250.4 351 52.1
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 5.2e-64 248.8 321 51.7
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 1.2e-63 247.7 291 56.7
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.8e-63 245.4 285 55.8
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 7.6e-63 245.0 306 55.2
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.1e-61 239.2 272 55.9
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 1.6e-60 237.3 289 55.7
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 4.6e-60 235.7 314 51.0
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 3.0e-59 233.0 287 51.6
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.9e-59 232.6 340 48.5
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.3e-58 229.2 294 54.4
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 5.6e-58 228.8 307 51.8
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 5.6e-58 228.8 294 54.4
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 8.1e-57 224.9 290 50.0
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.4e-56 224.2 305 49.8
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 2.4e-56 223.4 334 51.2
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 9.0e-56 221.5 290 52.4
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 9.0e-56 221.5 302 51.0
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 3.4e-55 219.5 317 50.5
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 5.8e-55 218.8 305 48.9
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 9.9e-55 218.0 310 50.3
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 3.8e-54 216.1 336 46.4
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 4.9e-54 215.7 279 52.0
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 1.1e-53 214.5 322 48.4
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 1.9e-53 213.8 303 47.5
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.2e-53 212.6 255 57.6
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 5.4e-53 212.2 295 49.5
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 3.5e-52 209.5 294 50.0
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.0e-51 208.0 339 45.7
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 6.6e-51 205.3 308 48.4
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.9e-50 203.8 321 46.7
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.9e-50 203.8 296 50.0
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 2.5e-50 203.4 306 46.4
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 5.6e-50 202.2 285 49.5
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 4.8e-49 199.1 310 48.1
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 1.1e-48 198.0 299 46.8
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 1.5e-47 194.1 240 54.2
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 2.0e-47 193.7 369 41.7
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.6e-47 193.4 271 51.7
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 5.8e-47 192.2 195 59.0
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.3e-46 191.0 282 50.4
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.3e-46 191.0 282 47.5
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.3e-46 191.0 121 85.1
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 2.2e-46 190.3 341 45.5
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 4.9e-46 189.1 342 44.4
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 4.9e-46 189.1 294 46.6
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 3.2e-45 186.4 257 49.8
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 4.2e-45 186.0 209 58.4
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 5.4e-45 185.7 298 47.3
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 1.6e-44 184.1 320 44.7
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 2.7e-44 183.3 289 46.4
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 3.5e-44 183.0 344 42.7
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 3.5e-44 183.0 344 42.7
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.5e-44 183.0 308 44.8
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 1.3e-43 181.0 321 43.3
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.3e-43 181.0 267 47.2
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 2.3e-43 180.3 308 46.1
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.0e-43 179.9 292 46.9
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 5.1e-43 179.1 298 44.3
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 8.7e-43 178.3 210 56.7
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.9e-42 177.2 272 48.9
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 2.5e-42 176.8 339 42.5
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.6e-41 174.1 278 49.3
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 2.8e-41 173.3 268 45.5
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 3.7e-41 172.9 269 45.7
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 6.2e-41 172.2 273 46.9
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 1.1e-40 171.4 341 42.8
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.8e-40 170.6 345 44.3
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 2.4e-40 170.2 340 42.4
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 2.4e-40 170.2 341 42.5
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 4.0e-40 169.5 339 41.9
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 4.0e-40 169.5 339 41.9
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 9.0e-40 168.3 279 45.2
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 5.8e-39 165.6 273 44.0
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.2e-38 163.7 267 44.9
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 2.2e-38 163.7 279 46.6
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 4.9e-38 162.5 318 42.8
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 1.9e-37 160.6 283 43.5
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 4.2e-37 159.5 340 41.5
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 9.3e-37 158.3 227 47.1
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 9.3e-37 158.3 365 38.9
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 2.7e-36 156.8 223 48.4
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 1.3e-35 154.5 174 54.0
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.3e-34 149.8 271 45.4
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 8.2e-33 145.2 283 42.4
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 5.3e-32 142.5 299 40.1
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.0e-30 138.3 216 48.1
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.3e-30 137.9 292 40.8
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.9e-30 136.7 252 40.5
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.9e-30 136.7 252 40.5
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 1.4e-29 134.4 277 37.9
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.9e-26 124.0 219 45.7
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.5e-26 123.6 265 42.6
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 3.3e-26 123.2 82 76.8
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.2e-23 114.8 296 35.1
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 1.1e-21 108.2 262 37.8
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 4.6e-20 102.8 90 66.7
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 3.0e-19 100.1 290 38.3
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.9e-18 97.4 139 48.9
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 3.7e-17 93.2 125 49.6
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 7.7e-15 85.5 262 34.0
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-13 81.6 69 66.7
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.4e-13 81.3 317 30.0
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 3.2e-13 80.1 160 42.5
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 2.1e-12 77.4 261 34.1
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 6.3e-09 65.9 127 39.4
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 1.1e-08 65.1 344 28.5
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 1.8e-08 64.3 78 53.8
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 4.1e-08 63.2 311 28.6
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 7.0e-08 62.4 347 30.0
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 9.1e-08 62.0 350 28.0
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 9.1e-08 62.0 364 28.8
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 1.2e-07 61.6 330 28.5
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 1.5e-07 61.2 353 28.0
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 2.6e-07 60.5 331 29.0
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 3.4e-07 60.1 99 42.4
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 4.5e-07 59.7 336 26.8
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 1.0e-06 58.5 347 28.0
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.0e-06 58.5 318 28.0
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 1.3e-06 58.2 355 26.2
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 1.3e-06 58.2 339 27.1
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 1.7e-06 57.8 336 28.6
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 1.7e-06 57.8 83 50.6
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 2.9e-06 57.0 292 29.5
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 2.9e-06 57.0 294 29.3
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 3.8e-06 56.6 309 27.2
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 5.0e-06 56.2 290 29.3
Os08g0474500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 6.5e-06 55.8 51 64.7
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 8.5e-06 55.5 338 28.1


User provided reference genes

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