Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p005155 Quercus lobata HOM05D000310 ORTHO05D338020 4.1e-60 234.6 123 100.0
QL12p032211 Quercus lobata HOM05D000310 ORTHO05D000509 2.8e-40 168.7 122 74.6
Cfa012193 Carpinus fangiana HOM05D000310 ORTHO05D000509 1.6e-24 116.3 118 54.2
Haze_08823 Corylus avellana HOM05D000310 ORTHO05D000509 6.3e-24 114.4 118 52.5
CiPaw.12G090300 Carya illinoinensis HOM05D000310 ORTHO05D000509 1.6e-19 99.8 118 48.3
CiPaw.11G131800 Carya illinoinensis HOM05D000310 ORTHO05D000509 2.7e-19 99.0 115 50.4
Manes.01G058600 Manihot esculenta HOM05D000310 ORTHO05D000509 9.7e-17 90.5 116 43.1
Atru.chr9.2143 Acer truncatum HOM05D000310 ORTHO05D000509 6.3e-16 87.8 115 42.6
Cpa.g.sc180.22 Carica papaya HOM05D000310 ORTHO05D000509 4.1e-15 85.1 136 42.6
Ciclev10019694m.g Citrus clementina HOM05D000310 ORTHO05D000509 6.9e-15 84.3 119 44.5
MD06G1088800 Malus domestica HOM05D000310 ORTHO05D000509 1.5e-14 83.2 124 46.0
Manes.02G018600 Manihot esculenta HOM05D000310 ORTHO05D000509 2.0e-14 82.8 118 42.4
MD00G1086500 Malus domestica HOM05D000310 ORTHO05D000509 5.9e-14 81.3 124 42.7
Potri.001G100700 Populus trichocarpa HOM05D000310 ORTHO05D000509 5.9e-14 81.3 110 42.7
Sabra01G0075600 Salix brachista HOM05D000310 ORTHO05D000509 5.9e-14 81.3 119 43.7
arahy.Tifrunner.gnm1.ann1.210HIX Arachis hypogaea HOM05D000310 ORTHO05D000509 7.7e-14 80.9 117 41.0
arahy.Tifrunner.gnm1.ann1.RMNX5H Arachis hypogaea HOM05D000310 ORTHO05D000509 7.7e-14 80.9 117 41.0
TWI81G0170 Tripterygium wilfordii HOM05D000310 ORTHO05D000509 2.2e-13 79.3 116 41.4
Eucgr.E00645 Eucalyptus grandis HOM05D000310 ORTHO05D000509 3.8e-13 78.6 122 42.6
FAN08G2727 Fragaria x ananassa HOM05D000310 ORTHO05D000509 1.4e-12 76.6 125 40.8
FAN13G2097 Fragaria x ananassa HOM05D000310 ORTHO05D000509 1.9e-12 76.3 125 40.0
Oeu049860.1 Olea europaea HOM05D000310 ORTHO05D000509 2.5e-12 75.9 115 40.0
Aqoxy7G00244 Aquilegia oxysepala HOM05D000310 ORTHO05D000509 3.2e-12 75.5 132 38.6
Potri.003G131400 Populus trichocarpa HOM05D000310 ORTHO05D000509 3.2e-12 75.5 119 39.5
Lj2A180T67 Lonicera japonica HOM05D000310 ORTHO05D000509 4.2e-12 75.1 116 40.5
Sabra03G0093700 Salix brachista HOM05D000310 ORTHO05D000509 4.2e-12 75.1 116 37.9
Prupe.5G104700 Prunus persica HOM05D000310 ORTHO05D000509 7.2e-12 74.3 124 41.9
TWI60G0821 Tripterygium wilfordii HOM05D000310 ORTHO05D000509 7.2e-12 74.3 116 40.5
DCAR_005571 Daucus carota HOM05D000310 ORTHO05D000509 9.4e-12 73.9 116 43.1
RcHm_v2.0_Chr7g0196881 Rosa chinensis HOM05D000310 ORTHO05D000509 9.4e-12 73.9 125 38.4
FvH4_5g02990 Fragaria vesca HOM05D000310 ORTHO05D000509 1.2e-11 73.6 125 39.2
Dinv37610 Davidia involucrata HOM05D000310 ORTHO05D000509 1.6e-11 73.2 122 40.2
FAN18G1502 Fragaria x ananassa HOM05D000310 ORTHO05D000509 1.6e-11 73.2 125 39.2
FAN04G0041 Fragaria x ananassa HOM05D000310 ORTHO05D000509 2.7e-11 72.4 125 39.2
TAR629G2908 Trochodendron aralioides HOM05D000310 ORTHO05D000509 6.1e-11 71.2 118 37.3
Lalb_Chr05g0224581 Lupinus albus HOM05D000310 ORTHO05D000509 7.9e-11 70.9 115 37.4
Oeu031427.1 Olea europaea HOM05D000310 ORTHO05D000509 7.9e-11 70.9 115 37.4
PGR031G2229 Punica granatum HOM05D000310 ORTHO05D000509 7.9e-11 70.9 117 39.3
Ca_10942_v3 Cicer arietinum L. HOM05D000310 ORTHO05D000509 1.4e-10 70.1 120 37.5
CSS0015803 Camellia sinensis var. sinensis HOM05D000310 ORTHO05D000509 1.8e-10 69.7 119 37.0
Medtr5g010070 Medicago truncatula HOM05D000310 ORTHO05D000509 2.3e-10 69.3 119 34.5
arahy.Tifrunner.gnm1.ann1.ISE35F Arachis hypogaea HOM05D000310 ORTHO05D000509 3.9e-10 68.6 112 39.3
TPR.G12846 Trifolium pratense HOM05D000310 ORTHO05D000509 3.9e-10 68.6 122 42.6
Duzib205G0958 Durio zibethinus HOM05D000310 ORTHO05D000509 5.1e-10 68.2 124 39.5
Lj4g0022509 Lotus japonicus HOM05D000310 ORTHO05D000509 8.8e-10 67.4 110 37.3
Nn1g01620 Nelumbo nucifera HOM05D000310 ORTHO05D000509 8.8e-10 67.4 118 36.4
Phvul.002G292100 Phaseolus vulgaris HOM05D000310 ORTHO05D000509 8.8e-10 67.4 105 39.0
arahy.Tifrunner.gnm1.ann1.92VMI9 Arachis hypogaea HOM05D000310 ORTHO05D000509 1.1e-09 67.0 112 38.4
COL.COLO4_08378 Corchorus olitorius HOM05D000310 ORTHO05D000509 2.6e-09 65.9 138 32.6
GSVIVG01019400001 Vitis vinifera HOM05D000310 ORTHO05D000509 2.6e-09 65.9 116 35.3
Actinidia14586 Actinidia chinensis HOM05D000310 ORTHO05D000509 3.3e-09 65.5 121 33.9
SGA_v2.0_scaffold173G39151 Striga asiatica HOM05D000310 ORTHO05D000509 3.3e-09 65.5 114 42.1
THA.LOC104813025 Tarenaya hassleriana HOM05D000310 ORTHO05D000509 3.3e-09 65.5 110 37.3
MBI11_g24789_MAGBIO Magnolia biondii HOM05D000310 ORTHO05D000509 4.4e-09 65.1 116 34.5
TAR375G0898 Trochodendron aralioides HOM05D000310 ORTHO05D000509 4.4e-09 65.1 106 35.8
Cc08_g15090 Coffea canephora HOM05D000310 ORTHO05D000509 5.7e-09 64.7 116 33.6
PGR042G1183 Punica granatum HOM05D000310 ORTHO05D000509 5.7e-09 64.7 112 38.4
CSS0033431 Camellia sinensis var. sinensis HOM05D000310 ORTHO05D000509 7.4e-09 64.3 117 34.2
Actinidia28358 Actinidia chinensis HOM05D000310 ORTHO05D000509 9.7e-09 63.9 121 33.9
AUR62019728 Chenopodium quinoa HOM05D000310 ORTHO05D000509 9.7e-09 63.9 113 36.3
THA.LOC104806420 Tarenaya hassleriana HOM05D000310 ORTHO05D000509 9.7e-09 63.9 116 35.3
Thecc.03G284300 Theobroma cacao HOM05D000310 ORTHO05D000509 1.7e-08 63.2 120 36.7
Glyma.05G210400 Glycine max HOM05D000310 ORTHO05D000509 2.2e-08 62.8 108 41.7
LjContig00312_ERROPOS870357g0009122 Lotus japonicus HOM05D000310 ORTHO05D000509 2.8e-08 62.4 102 37.3
Sc07g0009840 Simmondsia chinensis HOM05D000310 ORTHO05D000509 2.8e-08 62.4 121 37.2
Phvul.002G159100 Phaseolus vulgaris HOM05D000310 ORTHO05D000509 3.7e-08 62.0 108 36.1
MSTRG.11962 Avicennia marina HOM05D000310 ORTHO05D000509 4.8e-08 61.6 117 33.3
DCAR_008360 Daucus carota HOM05D000310 ORTHO05D000509 4.8e-08 61.6 106 37.7
VMungo0251G2612 Vigna mungo HOM05D000310 ORTHO05D000509 4.8e-08 61.6 105 38.1
A09p27810 Brassica napus HOM05D000310 ORTHO05D000509 6.3e-08 61.2 100 36.0
BraA09t38351Z Brassica rapa HOM05D000310 ORTHO05D000509 6.3e-08 61.2 100 36.0
Sp7g21380 Schrenkiella parvula HOM05D000310 ORTHO05D000509 6.3e-08 61.2 102 37.3
BraA01t01410Z Brassica rapa HOM05D000310 ORTHO05D000509 1.1e-07 60.5 101 36.6
MELO3C005701.2 Cucumis melo HOM05D000310 ORTHO05D000509 1.1e-07 60.5 116 35.3
Gohir.A12G234400 Gossypium hirsutum HOM05D000310 ORTHO05D000509 1.1e-07 60.5 116 35.3
BcaC04g21132 Brassica carinata HOM05D000310 ORTHO05D000509 1.4e-07 60.1 100 35.0
BcaNung01049 Brassica carinata HOM05D000310 ORTHO05D000509 1.4e-07 60.1 103 39.8
C09p35200 Brassica napus HOM05D000310 ORTHO05D000509 1.4e-07 60.1 100 35.0
BolC9t56366H Brassica oleracea HOM05D000310 ORTHO05D000509 1.4e-07 60.1 100 35.0
CsaV3_4G005880 Cucumis sativus L. HOM05D000310 ORTHO05D000509 1.4e-07 60.1 109 36.7
Carub.0007s1767 Capsella rubella HOM05D000310 ORTHO05D000509 2.4e-07 59.3 103 37.9
Gohir.D12G232900 Gossypium hirsutum HOM05D000310 ORTHO05D000509 2.4e-07 59.3 117 37.6
Gorai.008G249300 Gossypium raimondii HOM05D000310 ORTHO05D000509 2.4e-07 59.3 117 37.6
Hund14282 Selenicereus undatus HOM05D000310 ORTHO05D000509 2.4e-07 59.3 85 42.4
AT4G23490 Arabidopsis thaliana HOM05D000310 ORTHO05D000509 3.1e-07 58.9 101 36.6
Psat2g183800 Pisum sativum HOM05D000310 ORTHO05D000509 3.1e-07 58.9 108 37.0
TAR374G1621 Trochodendron aralioides HOM05D000310 ORTHO05D000509 3.1e-07 58.9 105 32.4
CARHR230810 Cardamine hirsuta HOM05D000310 ORTHO05D000509 4.1e-07 58.5 101 36.6
AUR62010721 Chenopodium quinoa HOM05D000310 ORTHO05D000509 4.1e-07 58.5 112 34.8
CsaV3_5G002550 Cucumis sativus L. HOM05D000310 ORTHO05D000509 4.1e-07 58.5 117 34.2
Thhalv10027721m.g Eutrema salsugineum HOM05D000310 ORTHO05D000509 4.1e-07 58.5 119 35.3
Hma1.2p1_1123F.1_g259300 Hydrangea macrophylla HOM05D000310 ORTHO05D000509 4.1e-07 58.5 109 33.0
Thhalv10028593m.g Eutrema salsugineum HOM05D000310 ORTHO05D000509 5.3e-07 58.2 105 33.3
Psat7g030960 Pisum sativum HOM05D000310 ORTHO05D000509 5.3e-07 58.2 107 35.5
VMungo1215G1859 Vigna mungo HOM05D000310 ORTHO05D000509 5.3e-07 58.2 102 41.2
A01p14710 Brassica napus HOM05D000310 ORTHO05D000509 9.1e-07 57.4 101 37.6
CAN.G532.16 Capsicum annuum HOM05D000310 ORTHO05D000509 9.1e-07 57.4 109 35.8
SGA_v2.0_scaffold111G31483 Striga asiatica HOM05D000310 ORTHO05D000509 9.1e-07 57.4 115 34.8
Actinidia27370 Actinidia chinensis HOM05D000310 ORTHO05D000509 1.2e-06 57.0 117 30.8
Glyma.01G221600 Glycine max HOM05D000310 ORTHO05D000509 1.2e-06 57.0 115 35.7
Oeu059489.1 Olea europaea HOM05D000310 ORTHO05D000509 1.2e-06 57.0 113 30.1
ClCG07G008220 Citrullus lanatus HOM05D000310 ORTHO05D000509 2.0e-06 56.2 113 37.2
Duzib068G0552 Durio zibethinus HOM05D000310 ORTHO05D000509 2.6e-06 55.8 120 35.8
Sp6g06100 Schrenkiella parvula HOM05D000310 ORTHO05D000509 2.6e-06 55.8 105 33.3
BcaC08g44531 Brassica carinata HOM05D000310 ORTHO05D000509 3.4e-06 55.5 117 33.3
C06p19890 Brassica napus HOM05D000310 ORTHO05D000509 3.4e-06 55.5 117 33.3
Hund11446 Selenicereus undatus HOM05D000310 ORTHO05D000509 3.4e-06 55.5 118 37.3
BcaB02g07892 Brassica carinata HOM05D000310 ORTHO05D000509 4.5e-06 55.1 117 35.9
BcaC09g50993 Brassica carinata HOM05D000310 ORTHO05D000509 4.5e-06 55.1 101 35.6
C01p18210 Brassica napus HOM05D000310 ORTHO05D000509 4.5e-06 55.1 101 35.6
BolC1t01747H Brassica oleracea HOM05D000310 ORTHO05D000509 4.5e-06 55.1 101 35.6
Nitab4.5_0000947g0100 Nicotiana tabacum HOM05D000310 ORTHO05D000509 4.5e-06 55.1 110 33.6
AT4G11350 Arabidopsis thaliana HOM05D000310 ORTHO05D000509 5.9e-06 54.7 100 33.0
Rhsim02G0234700 Rhododendron simsii HOM05D000310 ORTHO05D000509 5.9e-06 54.7 114 36.0
BcaB01g01635 Brassica carinata HOM05D000310 ORTHO05D000509 7.7e-06 54.3 100 37.0
CARHR291900 Cardamine hirsuta HOM05D000310 ORTHO05D000509 7.7e-06 54.3 121 33.9
THA.LOC104823596 Tarenaya hassleriana HOM05D000310 ORTHO05D000509 7.7e-06 54.3 111 32.4


User provided reference genes

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