Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p005070 Quercus lobata HOM05D000955 ORTHO05D001429 2.3e-30 135.2 83 100.0
QL02p004928 Quercus lobata HOM05D000955 ORTHO05D001429 2.8e-28 128.3 79 97.5
QL02p005025 Quercus lobata HOM05D000955 ORTHO05D001429 2.8e-28 128.3 79 97.5
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 1.1e-21 106.3 79 69.6
Actinidia23270 Actinidia chinensis HOM05D000955 ORTHO05D001429 4.4e-21 104.4 60 76.7
CSS0002475 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 5.7e-21 104.0 79 79.7
Thecc.08G008500 Theobroma cacao HOM05D000955 ORTHO05D001429 5.7e-21 104.0 61 82.0
Dinv35967 Davidia involucrata HOM05D000955 ORTHO05D001429 1.3e-20 102.8 80 83.8
CSS0002643 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 4.8e-20 100.9 79 77.2
Rhsim06G0048800 Rhododendron simsii HOM05D000955 ORTHO05D003340 2.7e-18 95.1 61 72.1
Rhsim06G0049200 Rhododendron simsii HOM05D000955 ORTHO05D001429 5.9e-18 94.0 61 72.1
vmacro21527 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 2.2e-17 92.0 60 68.3
Hma1.2p1_0982F.1_g243960 Hydrangea macrophylla HOM05D000955 ORTHO05D001429 3.8e-17 91.3 79 57.0
CSS0003971 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.1e-16 89.7 60 71.7
CSS0012590 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.5e-16 89.4 60 70.0
vmacro04454 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 1.9e-16 89.0 60 70.0
CSS0027110 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.5e-16 88.6 60 70.0
Rhsim06G0049100 Rhododendron simsii HOM05D000955 ORTHO05D001429 2.5e-16 88.6 80 75.0
vmacro21528 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 2.5e-16 88.6 60 68.3
CSS0049247 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 3.2e-16 88.2 60 70.0
CSS0009132 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 4.2e-16 87.8 60 70.0
Rhsim07G0228700 Rhododendron simsii HOM05D000955 ORTHO05D001429 4.2e-16 87.8 57 71.9
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 4.2e-16 87.8 60 65.0
Nitab4.5_0006068g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.6e-15 85.9 59 64.4
Nitab4.5_0002468g0040 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.1e-15 85.5 59 64.4
CSS0008676 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.7e-15 85.1 60 66.7
Nitab4.5_0001847g0020 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.7e-15 85.1 59 62.7
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.7e-15 84.3 60 61.7
Nitab4.5_0000686g0180 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.7e-15 84.3 60 61.7
CSS0046588 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.0e-14 83.2 60 66.7
Actinidia29868 Actinidia chinensis HOM05D000955 ORTHO05D001429 6.8e-14 80.5 52 71.2
CAN.G371.24 Capsicum annuum HOM05D000955 ORTHO05D001429 1.2e-13 79.7 59 59.3
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.2e-13 79.7 59 61.0
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 1.2e-13 79.7 60 60.0
Sopen01g015530 Solanum pennellii HOM05D000955 ORTHO05D001429 1.5e-13 79.3 79 48.1
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.0e-13 79.0 75 52.0
CAN.G371.25 Capsicum annuum HOM05D000955 ORTHO05D001429 2.6e-13 78.6 58 60.3
Nitab4.5_0000686g0170 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.6e-13 78.6 59 55.9
Solyc01g150126.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 2.6e-13 78.6 79 48.1
Sopen07g012140 Solanum pennellii HOM05D000955 ORTHO05D001429 2.6e-13 78.6 79 46.8
PGSC0003DMG400008042 Solanum tuberosum HOM05D000955 ORTHO05D001429 3.4e-13 78.2 53 66.0
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 5.7e-13 77.4 79 48.1
CAN.G445.5 Capsicum annuum HOM05D000955 ORTHO05D001429 7.5e-13 77.0 79 48.1
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.3e-12 76.3 73 52.1
Nitab4.5_0000686g0190 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.7e-12 75.9 53 62.3
Nitab4.5_0001847g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.7e-12 75.9 50 68.0
Nitab4.5_0010940g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.7e-12 75.9 50 68.0
Nitab4.5_0001722g0010 Nicotiana tabacum HOM05D001454 ORTHO05D001429 2.8e-12 75.1 47 70.2
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 2.8e-12 75.1 73 50.7
HanXRQChr09g0267671 Helianthus annuus HOM05D000955 ORTHO05D001429 8.3e-12 73.6 58 53.4
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 8.3e-12 73.6 58 58.6
Rhsim07G0228800 Rhododendron simsii HOM05D000955 ORTHO05D001429 8.3e-12 73.6 60 60.0
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 1.1e-11 73.2 54 55.6
CAN.G371.22 Capsicum annuum HOM05D000955 ORTHO05D001429 1.8e-11 72.4 59 55.9
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 2.4e-11 72.0 54 55.6
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.4e-11 72.0 57 59.6
CAN.G371.23 Capsicum annuum HOM05D000955 ORTHO05D001429 3.1e-11 71.6 57 50.9
Lsat_1_v5_gn_4_125200 Lactuca sativa HOM05D000955 ORTHO05D001429 4.1e-11 71.2 54 59.3
Nitab4.5_0001847g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.1e-11 71.2 47 66.0
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 4.1e-11 71.2 79 44.3
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 7.0e-11 70.5 49 69.4
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 9.1e-11 70.1 60 51.7
Nitab4.5_0006312g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 9.1e-11 70.1 54 59.3
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 2.7e-10 68.6 82 41.5
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 5.9e-10 67.4 79 41.8
PGSC0003DMG400015414 Solanum tuberosum HOM05D000955 ORTHO05D001429 5.9e-10 67.4 49 67.3
Nitab4.5_0001580g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 7.7e-10 67.0 49 63.3
Ciclev10002944m.g Citrus clementina HOM05D000955 ORTHO05D001429 1.3e-09 66.2 77 61.0
Lsat_1_v5_gn_4_125340 Lactuca sativa HOM05D000955 ORTHO05D001429 1.3e-09 66.2 57 50.9
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.7e-09 65.9 82 39.0
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.7e-09 65.9 82 39.0
Gohir.D06G016200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.9e-09 65.1 79 54.4
Gorai.010G019100 Gossypium raimondii HOM05D000955 ORTHO05D001429 2.9e-09 65.1 79 54.4
HanXRQChr09g0267701 Helianthus annuus HOM05D000955 ORTHO05D001429 2.9e-09 65.1 57 45.6
Solyc12g088840.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 2.9e-09 65.1 48 64.6
CAN.G1518.8 Capsicum annuum HOM05D000955 ORTHO05D001429 3.8e-09 64.7 60 51.7
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 3.8e-09 64.7 72 47.2
FAN20G2972 Fragaria x ananassa HOM05D017863 ORTHO05D020646 3.8e-09 64.7 54 57.4
CiPaw.16G045100 Carya illinoinensis HOM05D000955 ORTHO05D001429 5.0e-09 64.3 54 61.1
HanXRQChr09g0267841 Helianthus annuus HOM05D000955 ORTHO05D001429 5.0e-09 64.3 76 40.8
Ciclev10003536m.g Citrus clementina HOM05D000955 ORTHO05D001429 6.5e-09 63.9 43 69.8
Gohir.A06G017900 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.5e-09 63.5 79 53.2
Gohir.D06G016300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.5e-09 63.5 79 40.5
Gorai.010G019200 Gossypium raimondii HOM05D000955 ORTHO05D001429 8.5e-09 63.5 79 40.5
TWI36G1204 Tripterygium wilfordii HOM05D000955 ORTHO05D001429 8.5e-09 63.5 46 60.9
vmacro23310 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 8.5e-09 63.5 45 66.7
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 1.1e-08 63.2 54 55.6
Peaxi162Scf01890g00010 Petunia axillaris HOM05D000955 ORTHO05D001429 1.5e-08 62.8 49 63.3
COL.COLO4_26488 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.9e-08 62.4 60 46.7
Gohir.A01G119200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.5e-08 62.0 59 52.5
Gohir.D01G107400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.5e-08 62.0 59 52.5
Gorai.002G131800 Gossypium raimondii HOM05D000955 ORTHO05D001429 2.5e-08 62.0 59 52.5
Lsat_1_v5_gn_4_125420 Lactuca sativa HOM05D000955 ORTHO05D001429 2.5e-08 62.0 57 45.6
QL02p005106 Quercus lobata HOM05D000955 ORTHO05D001429 2.5e-08 62.0 56 53.6
QL11p020910 Quercus lobata HOM05D000955 ORTHO05D001429 2.5e-08 62.0 56 53.6
Sopen12g030730 Solanum pennellii HOM05D000955 ORTHO05D001429 5.5e-08 60.8 49 59.2
Atru.chr13.679 Acer truncatum HOM05D000955 ORTHO05D001429 7.2e-08 60.5 55 52.7
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 7.2e-08 60.5 49 55.1
CiPaw.15G060000 Carya illinoinensis HOM05D000955 ORTHO05D001429 7.2e-08 60.5 48 56.2
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 9.4e-08 60.1 48 60.4
QL02p005158 Quercus lobata HOM05D000955 ORTHO05D001429 9.4e-08 60.1 49 53.1
Nitab4.5_0013573g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.2e-07 59.7 39 64.1
Nitab4.5_0015075g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.2e-07 59.7 60 53.3
Phvul.001G021750 Phaseolus vulgaris HOM05D000955 ORTHO05D001429 1.2e-07 59.7 66 43.9
Potri.014G030100 Populus trichocarpa HOM05D000955 ORTHO05D001429 1.6e-07 59.3 53 56.6
PGSC0003DMG400008043 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.6e-07 59.3 40 62.5
TAR628G1637 Trochodendron aralioides HOM05D000955 ORTHO05D003340 1.6e-07 59.3 49 53.1
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 2.1e-07 58.9 49 59.2
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 2.1e-07 58.9 49 59.2
CiPaw.16G045200 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.1e-07 58.9 49 53.1
QL02p005168 Quercus lobata HOM05D000955 ORTHO05D001429 2.1e-07 58.9 49 53.1
Cfa018536 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.7e-07 58.5 49 55.1
Gohir.A03G076700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.7e-07 58.5 47 55.3
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.7e-07 58.5 47 61.7
Atru.chr13.676 Acer truncatum HOM05D000955 ORTHO05D001429 3.6e-07 58.2 48 60.4
CiPaw.15G060400 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.6e-07 58.2 60 48.3
AUR62014426 Chenopodium quinoa HOM05D000955 ORTHO05D001429 3.6e-07 58.2 55 50.9
AUR62034571 Chenopodium quinoa HOM05D000955 ORTHO05D001429 3.6e-07 58.2 55 50.9
Nitab4.5_0001101g0050 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.6e-07 58.2 47 61.7
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 3.6e-07 58.2 47 57.4
Thecc.08G009100 Theobroma cacao HOM05D000955 ORTHO05D001429 3.6e-07 58.2 54 48.1
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 4.7e-07 57.8 77 39.0
Atru.chr13.660 Acer truncatum HOM05D000955 ORTHO05D001429 6.1e-07 57.4 79 34.2
CiPaw.16G045300 Carya illinoinensis HOM05D000955 ORTHO05D001429 6.1e-07 57.4 49 51.0
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 6.1e-07 57.4 66 43.9
Cfa018542 Carpinus fangiana HOM05D000955 ORTHO05D001429 8.0e-07 57.0 54 48.1
COL.COLO4_26493 Corchorus olitorius HOM05D000955 ORTHO05D001429 8.0e-07 57.0 47 57.4
Sed0002759 Sechium edule HOM05D000955 ORTHO05D001429 8.0e-07 57.0 58 51.7
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 8.0e-07 57.0 62 46.8
Thecc.08G008700 Theobroma cacao HOM05D000955 ORTHO05D001429 8.0e-07 57.0 49 53.1
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.0e-06 56.6 48 52.1
RcHm_v2.0_Chr6g0307841 Rosa chinensis HOM05D000955 ORTHO05D001429 1.0e-06 56.6 48 56.2
Sed0022742 Sechium edule HOM05D000955 ORTHO05D001429 1.0e-06 56.6 48 60.4
Sopen04g032650 Solanum pennellii HOM05D000955 ORTHO05D001429 1.0e-06 56.6 39 64.1
Duzib093G0375 Durio zibethinus HOM05D000955 ORTHO05D001429 1.4e-06 56.2 63 46.0
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 1.4e-06 56.2 53 49.1
Atru.chr13.672 Acer truncatum HOM05D000955 ORTHO05D001429 1.8e-06 55.8 58 46.6
ClCG08G015910 Citrullus lanatus HOM05D000955 ORTHO05D001429 1.8e-06 55.8 48 56.2
Gohir.D02G091450 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.8e-06 55.8 47 53.2
EL10Ac1g00552 Beta vulgaris HOM05D000955 ORTHO05D001429 2.3e-06 55.5 57 43.9
Sed0000195 Sechium edule HOM05D000955 ORTHO05D001429 2.3e-06 55.5 48 54.2
HPP92_016724 Vanilla planifolia HOM05D000955 ORTHO05D003340 2.3e-06 55.5 60 46.7
Atru.chr13.685 Acer truncatum HOM05D000955 ORTHO05D001429 3.0e-06 55.1 47 57.4
Ah.05g171940 Amaranthus hybridus HOM05D000955 ORTHO05D001429 3.0e-06 55.1 57 45.6
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 5.2e-06 54.3 46 52.2
Aqoxy5G01248 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 6.8e-06 53.9 47 46.8
MELO3C010863.2 Cucumis melo HOM05D000955 ORTHO05D001429 6.8e-06 53.9 48 54.2
CiPaw.15G060100 Carya illinoinensis HOM05D000955 ORTHO05D001429 8.8e-06 53.5 54 53.7
Glyma.17G242550 Glycine max HOM05D000955 ORTHO05D001429 8.8e-06 53.5 60 46.7
Sed0014484 Sechium edule HOM05D000955 ORTHO05D001429 8.8e-06 53.5 48 56.2
PGSC0003DMG400007984 Solanum tuberosum HOM05D000955 ORTHO05D001429 8.8e-06 53.5 47 55.3


User provided reference genes

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