Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 3.2e-270 934.5 467 100.0
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 4.4e-171 605.1 475 69.9
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.4e-164 583.6 467 66.4
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 2.4e-164 582.8 467 66.4
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 3.5e-160 568.9 467 65.5
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 9.0e-148 527.7 477 59.7
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 2.6e-147 526.2 466 60.7
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 7.6e-147 524.6 468 59.6
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 6.5e-146 521.5 467 60.6
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 8.4e-146 521.2 477 59.3
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.1e-145 518.1 453 61.6
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.0e-144 515.0 475 58.5
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 5.1e-143 511.9 476 58.8
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 5.1e-143 511.9 471 60.9
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.5e-142 510.4 476 58.6
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 1.3e-141 507.3 467 60.6
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 2.1e-141 506.5 474 60.1
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.8e-140 503.4 470 58.3
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.5e-139 500.4 450 59.6
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 4.5e-139 498.8 486 56.6
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.9e-137 493.4 469 59.7
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.1e-136 490.0 471 57.1
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.3e-135 487.3 410 63.4
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 2.8e-133 479.6 414 61.4
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 6.9e-132 474.9 483 58.8
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.2e-131 474.2 477 57.4
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 1.0e-130 471.1 486 57.6
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.3e-130 470.7 478 54.6
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.2e-130 469.9 485 57.3
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 8.5e-130 468.0 478 55.0
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.9e-129 466.8 489 54.8
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 7.2e-129 464.9 479 57.4
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.2e-128 464.2 488 53.7
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.1e-128 463.4 479 56.8
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.8e-127 460.3 422 58.8
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.5e-126 456.4 479 56.6
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 3.3e-126 456.1 475 55.6
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 4.3e-126 455.7 495 52.5
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 7.4e-126 454.9 392 61.7
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 9.7e-126 454.5 502 51.8
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.7e-125 453.8 504 52.0
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.2e-125 453.4 394 61.2
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.3e-125 451.8 394 60.9
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 9.1e-124 448.0 476 54.4
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.5e-123 447.2 494 52.8
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 4.5e-123 445.7 469 54.4
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 5.9e-123 445.3 476 52.9
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 5.9e-123 445.3 473 56.0
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 2.2e-122 443.4 479 53.2
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 3.8e-122 442.6 432 58.1
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 5.5e-121 438.7 479 53.7
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 7.2e-121 438.3 485 53.4
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 1.2e-120 437.6 483 54.5
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 2.1e-120 436.8 480 53.3
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 6.7e-119 431.8 473 53.9
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 8.8e-119 431.4 482 53.5
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.1e-118 431.0 442 55.7
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.1e-118 431.0 487 52.2
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 4.4e-118 429.1 473 52.6
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 5.7e-118 428.7 485 50.3
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 7.4e-118 428.3 391 61.9
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 9.7e-118 427.9 382 61.5
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 2.8e-117 426.4 481 53.6
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 3.7e-117 426.0 483 53.0
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 6.3e-117 425.2 491 52.1
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.4e-116 424.1 482 51.9
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.5e-115 419.1 405 55.8
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 2.9e-114 416.4 485 49.9
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 5.0e-114 415.6 434 53.5
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.9e-113 413.7 479 50.9
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 2.5e-113 413.3 478 50.4
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.6e-112 410.6 477 50.3
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 8.8e-111 404.8 480 49.8
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 1.1e-110 404.4 425 54.6
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 2.0e-107 393.7 482 48.1
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 3.5e-107 392.9 453 47.5
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 5.9e-107 392.1 486 47.1
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.9e-106 389.8 482 48.3
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 3.8e-106 389.4 464 51.1
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.1e-104 383.6 473 48.8
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.0e-103 381.3 477 47.2
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.8e-103 380.6 477 49.1
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 2.3e-103 380.2 391 56.0
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 3.0e-103 379.8 387 54.8
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 3.0e-103 379.8 468 49.8
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 7.5e-102 375.2 490 47.3
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 6.3e-101 372.1 461 49.0
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 8.3e-101 371.7 469 48.2
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 3.1e-100 369.8 476 47.5
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 3.1e-100 369.8 390 54.4
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.6e-99 367.5 463 47.3
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 4.5e-99 365.9 394 52.3
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 7.7e-99 365.2 468 48.7
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 6.5e-98 362.1 473 49.0
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 5.5e-97 359.0 349 57.0
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.2e-96 357.8 374 53.5
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 2.3e-95 353.6 470 46.6
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 1.8e-92 344.0 394 49.0
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.4e-92 343.6 435 46.4
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 5.4e-92 342.4 466 44.8
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 5.0e-90 335.9 471 42.7
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.5e-89 334.3 501 42.7
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 2.5e-89 333.6 400 48.8
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 4.7e-88 329.3 503 42.1
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.4e-86 322.8 434 44.7
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 2.2e-85 320.5 502 43.2
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 3.2e-84 316.6 502 41.2
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 5.4e-84 315.8 496 42.5
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 8.6e-82 308.5 491 41.3
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 1.2e-80 304.7 503 41.4
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.7e-80 302.8 291 57.7
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 8.9e-79 298.5 506 41.3
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 1.2e-78 298.1 506 41.5
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.3e-77 294.7 476 40.5
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.2e-77 293.9 465 41.3
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 5.0e-74 282.7 229 62.0
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 1.1e-73 281.6 197 71.1
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 4.3e-73 279.6 469 40.5
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 1.6e-72 277.7 498 39.4
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 5.8e-70 269.2 458 39.1
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 2.2e-69 267.3 377 43.0
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 3.7e-69 266.5 196 68.9
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 9.2e-68 261.9 459 39.7
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.1e-67 260.8 459 39.4
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.5e-65 254.6 453 36.6
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.9e-65 254.2 384 39.6
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 4.7e-64 249.6 466 35.4
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 1.1e-63 248.4 397 40.3
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.8e-62 242.7 498 33.5
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.7e-61 241.1 412 38.3
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.2e-56 224.9 194 59.8
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.9e-55 218.8 408 36.0
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.2e-51 208.4 498 32.5
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.2e-51 208.4 399 35.1
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 5.6e-49 199.5 155 61.9
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 7.3e-49 199.1 411 34.1
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.1e-44 185.3 495 31.5
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.2e-40 169.5 346 35.8
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 9.0e-39 165.6 161 53.4
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 9.0e-39 165.6 161 53.4
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 5.8e-38 162.9 170 50.0
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.7e-37 161.4 335 37.9
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 2.2e-37 161.0 109 64.2
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 4.9e-37 159.8 409 30.1
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.1e-36 158.7 172 50.0
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.9e-36 157.9 169 50.3
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 3.5e-35 153.7 353 31.4
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.8e-34 151.4 265 38.9
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.8e-34 151.4 265 38.9
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.9e-33 147.9 163 43.6
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.5e-33 147.5 337 33.5
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.1e-28 132.1 149 47.7
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.3e-21 108.6 260 33.8
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 8.5e-13 79.3 108 44.4
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 1.1e-12 79.0 144 36.8


User provided reference genes

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