Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 1.3e-116 422.9 200 100.0
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 1.9e-94 349.4 188 84.0
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 1.5e-91 339.7 210 76.7
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 1.3e-90 336.7 188 81.9
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 7.6e-88 327.4 191 79.6
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 2.5e-86 322.4 183 80.3
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 7.2e-86 320.9 190 78.4
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 7.2e-86 320.9 190 79.5
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 9.3e-86 320.5 191 80.1
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 1.6e-85 319.7 192 79.2
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 3.6e-85 318.5 176 81.2
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 1.3e-84 316.6 180 81.1
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 2.3e-84 315.8 177 83.1
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 3.9e-84 315.1 188 77.7
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 8.7e-84 313.9 188 77.1
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 1.1e-83 313.5 183 80.9
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 4.3e-83 311.6 169 82.8
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 7.4e-83 310.8 181 77.9
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 1.3e-82 310.1 181 76.8
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 1.6e-82 309.7 180 81.7
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 2.2e-82 309.3 183 76.5
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 2.2e-82 309.3 183 78.1
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 3.7e-82 308.5 191 75.9
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 4.8e-82 308.1 183 76.0
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 1.1e-81 307.0 192 74.5
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 2.4e-81 305.8 189 78.3
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 2.4e-81 305.8 184 77.2
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 3.1e-81 305.4 183 78.1
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 5.3e-81 304.7 183 76.0
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 5.3e-81 304.7 189 75.7
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 6.9e-81 304.3 173 76.3
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 1.2e-80 303.5 182 78.6
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 2.0e-80 302.8 164 82.3
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 2.0e-80 302.8 173 78.6
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 3.4e-80 302.0 176 77.3
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 7.7e-80 300.8 175 78.9
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 1.3e-79 300.1 191 74.3
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 2.9e-79 298.9 186 73.7
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 2.9e-79 298.9 160 83.8
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 3.8e-79 298.5 187 73.8
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 3.8e-79 298.5 170 78.2
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 3.8e-79 298.5 170 78.2
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 6.5e-79 297.7 205 71.7
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 8.5e-79 297.4 188 73.4
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 8.5e-79 297.4 177 72.3
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 1.1e-78 297.0 183 73.2
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 1.9e-78 296.2 183 73.8
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.5e-78 295.8 186 73.7
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 2.5e-78 295.8 185 74.6
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 3.2e-78 295.4 181 73.5
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 3.2e-78 295.4 193 71.5
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.2e-78 295.0 186 73.7
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 5.5e-78 294.7 177 74.6
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 7.2e-78 294.3 191 70.7
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 7.2e-78 294.3 183 75.4
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 1.2e-77 293.5 188 70.7
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 1.6e-77 293.1 161 81.4
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 6.1e-77 291.2 194 70.1
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 7.9e-77 290.8 188 72.3
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 7.9e-77 290.8 183 71.6
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 3.0e-76 288.9 177 71.8
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 3.9e-76 288.5 185 70.8
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 5.1e-76 288.1 190 69.5
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 6.7e-76 287.7 162 78.4
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 8.8e-76 287.3 168 75.6
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.1e-75 287.0 170 74.1
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 2.0e-75 286.2 161 78.9
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 1.7e-74 283.1 197 70.1
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 4.8e-74 281.6 200 66.0
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 4.8e-74 281.6 178 74.2
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 1.1e-73 280.4 197 69.0
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 1.1e-73 280.4 197 69.0
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 2.4e-73 279.3 197 69.0
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 9.1e-73 277.3 197 69.5
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 9.1e-73 277.3 163 78.5
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 1.5e-72 276.6 185 67.6
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 3.4e-72 275.4 181 70.2
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 5.9e-72 274.6 197 68.0
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 1.0e-71 273.9 183 70.5
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 2.2e-71 272.7 180 72.2
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 2.2e-71 272.7 187 67.9
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 2.9e-71 272.3 197 66.5
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 5.0e-71 271.6 180 72.2
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 6.5e-71 271.2 197 66.0
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 8.5e-71 270.8 197 66.0
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 1.1e-70 270.4 175 70.9
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 1.9e-70 269.6 197 66.0
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 2.5e-70 269.2 174 71.8
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 3.2e-70 268.9 179 68.7
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 4.2e-70 268.5 197 65.0
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 5.5e-70 268.1 226 57.5
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 5.5e-70 268.1 149 83.2
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 5.5e-70 268.1 183 71.0
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 7.2e-70 267.7 161 75.8
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 1.8e-68 263.1 183 67.8
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 4.4e-67 258.5 151 82.1
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 2.2e-66 256.1 175 68.0
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 2.8e-66 255.8 159 78.6
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 3.7e-66 255.4 139 80.6
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.8e-65 253.1 158 71.5
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 3.5e-64 248.8 181 65.7
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 1.0e-63 247.3 176 65.3
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 1.7e-63 246.5 253 53.8
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.2e-61 240.4 160 65.6
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 1.0e-60 237.3 149 73.8
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 1.4e-60 236.9 142 77.5
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 3.0e-60 235.7 265 49.4
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 2.6e-59 232.6 153 71.2
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 2.0e-56 223.0 129 80.6
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 3.5e-56 222.2 189 55.6
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.3e-55 220.3 149 69.1
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 1.7e-50 203.4 133 69.9
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 2.2e-50 203.0 153 61.4
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 1.1e-49 200.7 169 57.4
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.8e-49 199.9 169 55.6
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 4.1e-49 198.7 149 60.4
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 6.5e-47 191.4 111 81.1
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.5e-46 190.3 107 79.4
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.9e-46 189.9 114 78.1
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 9.5e-46 187.6 104 80.8
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 8.0e-45 184.5 117 71.8
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 6.8e-44 181.4 116 76.7
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 1.5e-43 180.3 130 65.4
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 5.7e-43 178.3 130 64.6
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 4.5e-40 168.7 223 41.3
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 8.0e-37 157.9 120 57.5
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 1.4e-36 157.1 119 63.0
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 8.9e-36 154.5 91 74.7
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 2.9e-34 149.4 136 52.9
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 5.0e-31 138.7 89 65.2
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 7.3e-30 134.8 83 69.9
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 4.1e-25 119.0 181 42.5
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 6.0e-24 115.2 98 61.2
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 1.0e-23 114.4 80 65.0
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 6.8e-20 101.7 174 38.5
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 7.3e-14 81.6 45 82.2


User provided reference genes

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