Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1973.4 1002 100.0
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1756.1 1009 87.5
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1669.1 965 87.9
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1660.6 1005 82.7
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1653.6 1008 82.9
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1631.7 1009 82.2
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1620.1 1024 80.3
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1618.6 1011 81.5
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1610.1 1011 80.3
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1607.8 1006 79.8
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1607.0 1006 79.8
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1601.6 1005 80.9
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1599.3 1008 80.1
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1592.8 1014 79.8
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1591.2 1031 77.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1586.2 1031 77.5
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1584.7 1006 80.1
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1583.5 1024 78.0
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1580.5 1042 76.7
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1575.8 1008 79.3
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1570.4 1008 79.2
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1569.3 1009 79.3
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1566.2 1003 79.4
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1563.5 1013 78.3
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1559.7 1010 77.5
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1556.6 1005 78.8
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1552.0 1010 78.6
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1546.2 1014 77.9
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1545.0 1011 77.3
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1538.9 1008 78.0
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1536.5 1009 77.8
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1533.5 1016 75.6
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1533.1 1021 76.6
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1532.3 1007 77.4
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1528.1 1016 75.4
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1526.9 1016 75.3
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1526.1 1011 77.7
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1524.6 1018 76.4
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1523.1 1004 77.9
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1520.4 929 83.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1517.3 1004 77.6
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1516.5 1010 77.7
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1510.7 1015 76.4
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1508.0 1008 75.3
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1505.0 1007 76.2
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1501.1 1010 74.8
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1501.1 1053 73.7
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1491.1 971 78.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1486.5 1043 73.6
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1486.1 964 79.4
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1486.1 1012 75.6
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1484.5 1006 75.7
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1482.2 1014 74.6
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1479.9 1014 74.5
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1479.2 1014 74.0
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1479.2 1014 74.4
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1479.2 1014 73.9
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1477.6 1029 74.0
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1477.2 1015 75.1
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1476.5 1014 74.5
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1474.1 1013 74.6
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1473.8 1013 74.6
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1473.4 1013 74.6
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1471.8 1013 74.5
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1471.1 1021 73.2
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1468.4 1013 74.4
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1460.7 1090 70.7
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1458.4 1012 73.0
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1458.0 1009 72.8
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1457.2 1009 72.7
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1454.9 1008 73.5
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1451.4 1047 71.5
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1448.3 1006 73.3
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1446.0 1013 72.7
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1439.9 984 74.1
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1431.0 1015 72.5
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1430.2 1006 73.0
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1429.8 1002 73.7
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1429.8 1026 72.0
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1419.4 1016 71.4
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1418.3 1110 68.6
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1406.0 1015 71.1
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1404.0 1025 69.9
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1386.7 1004 70.0
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1382.5 999 71.9
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1382.1 1019 69.6
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1380.9 999 71.2
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1378.6 1006 70.2
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1363.6 984 71.2
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1354.7 1041 68.0
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1350.9 1029 68.5
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1340.5 1011 69.0
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1338.2 979 70.3
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1333.5 1015 68.2
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1329.7 1006 69.2
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1323.1 1025 67.7
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1321.2 963 70.4
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 1000 68.7
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1317.4 1040 66.4
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1315.8 1144 61.6
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1308.1 862 78.1
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1302.3 1012 67.8
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1299.6 1007 67.9
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1294.6 1172 59.9
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1276.5 916 71.9
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1273.8 946 69.3
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1273.8 1014 66.5
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1266.1 1042 64.0
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1264.6 1006 66.3
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1260.7 1007 66.1
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1256.1 1007 65.2
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1231.5 1017 64.8
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1221.5 1000 62.5
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1201.4 1010 61.7
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1196.8 809 76.3
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1191.4 979 66.7
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1187.9 1010 60.8
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1162.1 896 68.0
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1159.8 859 70.2
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1138.6 928 62.8
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 0.0e+00 1080.5 947 62.3
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 3.3e-304 1048.5 623 86.5
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 8.1e-287 990.7 628 80.4
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 6.6e-281 971.1 785 65.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.3e-280 968.8 874 59.4
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 4.7e-271 938.3 1032 51.2
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.7e-268 929.9 1037 49.8
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 2.0e-261 906.4 641 74.6
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.2e-253 880.6 981 50.2
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.6e-239 833.6 623 68.9
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.1e-238 830.9 1025 46.7
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.2e-236 823.2 1011 46.6
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 3.1e-222 776.2 1234 41.2
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.0e-216 756.9 879 45.8
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 5.2e-185 652.5 391 83.4
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 9.5e-179 631.7 357 87.1
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 6.4e-167 592.4 389 77.4
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.1e-163 581.6 448 69.2
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 2.6e-160 570.5 479 65.8
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.7e-159 567.8 554 54.3
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 2.5e-147 527.3 526 56.1
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 9.1e-113 412.5 237 87.8
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.2e-106 391.3 262 75.2
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.3e-103 382.1 205 85.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 9.4e-102 375.9 298 67.1
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-88 332.4 235 74.9
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.5e-86 325.5 840 29.5
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 2.1e-85 321.6 239 69.0
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 2.9e-79 301.2 162 87.7
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 7.8e-72 276.6 150 85.3
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 2.5e-70 271.6 147 99.3
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.2e-67 262.7 227 61.7
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.3e-63 249.2 229 61.6
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 5.6e-62 243.8 291 53.3
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.1e-49 200.3 510 31.0
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 5.1e-47 194.1 114 75.4
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 4.2e-41 174.5 129 69.8
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 4.2e-41 174.5 203 51.7
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 9.2e-41 173.3 150 60.7
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.3e-39 168.7 90 80.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.4e-33 149.4 131 62.6
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.3e-29 136.3 115 59.1
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 6.2e-29 134.0 77 80.5
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.9e-26 125.2 119 61.3
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 8.4e-26 123.6 80 75.0
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-23 115.5 96 59.4
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 4.0e-20 104.8 95 57.9
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 4.0e-20 104.8 95 57.9
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 2.6e-19 102.1 77 67.5
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 6.0e-16 90.9 89 61.8
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.8e-15 89.4 113 44.2
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 5.8e-11 74.3 57 64.9
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 7.6e-11 73.9 77 55.8
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.7e-08 65.5 65 50.8
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 5.7e-06 57.8 68 54.4


User provided reference genes

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