Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 2.4e-79 299.3 215 100.0
QL02p002250 Quercus lobata HOM05D004728 ORTHO05D002375 3.3e-44 182.6 187 75.9
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 3.4e-25 119.4 183 49.7
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 4.6e-22 109.0 214 39.3
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.3e-21 107.5 214 39.3
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.3e-21 107.5 182 49.5
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 4.3e-20 102.4 221 43.4
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 6.2e-19 98.6 188 45.7
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 8.1e-19 98.2 184 47.3
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 1.8e-18 97.1 173 49.1
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 3.1e-18 96.3 184 42.9
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 2.0e-17 93.6 157 46.5
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 3.9e-13 79.3 92 60.9
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 5.1e-13 79.0 189 40.7
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 8.7e-13 78.2 89 64.0
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 2.5e-12 76.6 192 42.2
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 3.3e-12 76.3 153 43.1
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 3.3e-12 76.3 91 59.3
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 4.3e-12 75.9 93 61.3
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 5.6e-12 75.5 179 43.0
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 7.4e-12 75.1 91 60.4
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 7.4e-12 75.1 93 52.7
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 1.6e-11 73.9 176 40.3
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.1e-11 73.6 174 39.1
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 2.8e-11 73.2 92 58.7
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 4.8e-11 72.4 188 41.0
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 6.2e-11 72.0 188 41.5
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 8.1e-11 71.6 150 45.3
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 8.1e-11 71.6 95 55.8
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.1e-10 71.2 118 46.6
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 1.1e-10 71.2 93 54.8
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 1.1e-10 71.2 132 41.7
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.1e-10 71.2 137 43.8
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.4e-10 70.9 95 54.7
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 1.4e-10 70.9 91 60.4
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.8e-10 70.5 93 51.6
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 2.4e-10 70.1 90 58.9
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 4.0e-10 69.3 92 53.3
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 4.0e-10 69.3 95 52.6
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 5.3e-10 68.9 178 39.3
Sabra02G0079600 Salix brachista HOM05D004728 ORTHO05D002375 5.3e-10 68.9 189 46.0
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 6.9e-10 68.6 127 46.5
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 6.9e-10 68.6 90 61.1
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 6.9e-10 68.6 118 27.1
Hund23288 Selenicereus undatus HOM05D004728 ORTHO05D002375 9.0e-10 68.2 150 40.7
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.2e-09 67.8 93 45.2
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 1.2e-09 67.8 180 39.4
FAN13G0425 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.0e-09 67.0 175 37.1
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 2.6e-09 66.6 110 46.4
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 2.6e-09 66.6 183 41.0
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 4.5e-09 65.9 89 55.1
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 5.8e-09 65.5 92 35.9
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 5.8e-09 65.5 137 46.0
ECA247G0078 Erigeron canadensis HOM05D004728 ORTHO05D002375 5.8e-09 65.5 128 50.8
FAN08G2352 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.8e-09 65.5 105 52.4
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 5.8e-09 65.5 93 51.6
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 5.8e-09 65.5 92 55.4
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 7.6e-09 65.1 90 40.0
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 9.9e-09 64.7 147 29.3
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 9.9e-09 64.7 147 29.3
SGA_v2.0_scaffold48G17928 Striga asiatica HOM05D004728 ORTHO05D002375 9.9e-09 64.7 87 59.8
HanXRQChr05g0149651 Helianthus annuus HOM05D004728 ORTHO05D002375 1.3e-08 64.3 94 50.0
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.7e-08 63.9 180 33.9
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.7e-08 63.9 93 48.4
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 2.2e-08 63.5 96 54.2
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 2.9e-08 63.2 93 49.5
Potri.002G101500 Populus trichocarpa HOM05D004728 ORTHO05D002375 2.9e-08 63.2 192 42.7
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 3.8e-08 62.8 141 40.4
Eucgr.F00382 Eucalyptus grandis HOM05D004728 ORTHO05D002375 3.8e-08 62.8 105 49.5
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 4.9e-08 62.4 92 53.3
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.9e-08 62.4 93 47.3
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 4.9e-08 62.4 92 56.5
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 4.9e-08 62.4 191 37.2
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 4.9e-08 62.4 93 51.6
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 6.4e-08 62.0 119 27.7
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 8.4e-08 61.6 121 40.5
Oeu000784.1 Olea europaea HOM05D004728 ORTHO05D002375 8.4e-08 61.6 90 53.3
VMungo0647G1593 Vigna mungo HOM05D012119 ORTHO05D002375 8.4e-08 61.6 105 41.0
FvH4_1g20190 Fragaria vesca HOM05D004728 ORTHO05D002375 1.1e-07 61.2 93 51.6
FAN19G1373 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.1e-07 61.2 93 51.6
PSO675G6306 Papaver somniferum HOM05D004728 ORTHO05D002375 1.1e-07 61.2 117 46.2
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 1.1e-07 61.2 91 47.3
RcHm_v2.0_Chr7g0238201 Rosa chinensis HOM05D004728 ORTHO05D002375 1.1e-07 61.2 190 37.4
Migut.C01096 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.4e-07 60.8 157 38.9
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.4e-07 60.8 183 34.4
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.4e-07 60.8 131 41.2
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.4e-07 60.8 152 35.5
Hma1.2p1_1180F.1_g264660 Hydrangea macrophylla HOM05D004728 ORTHO05D002375 1.9e-07 60.5 92 56.5
MELO3C011050.2 Cucumis melo HOM05D039494 ORTHO05D002375 3.2e-07 59.7 95 35.8
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 3.2e-07 59.7 180 33.9
Lj4A728G42 Lonicera japonica HOM05D004728 ORTHO05D002375 3.2e-07 59.7 166 29.5
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 4.2e-07 59.3 122 43.4
ECA247G3235 Erigeron canadensis HOM05D004728 ORTHO05D002375 5.5e-07 58.9 92 45.7
HanXRQChr09g0250741 Helianthus annuus HOM05D004728 ORTHO05D002375 5.5e-07 58.9 119 37.8
SalBow3G1954 Salvia bowleyana HOM05D004728 ORTHO05D002375 7.1e-07 58.5 175 38.3
arahy.Tifrunner.gnm1.ann1.30DIRF Arachis hypogaea HOM05D012119 ORTHO05D002375 9.3e-07 58.2 148 37.8
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 9.3e-07 58.2 180 36.1
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 9.3e-07 58.2 92 47.8
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 9.3e-07 58.2 93 49.5
arahy.Tifrunner.gnm1.ann1.69RQXC Arachis hypogaea HOM05D012119 ORTHO05D002375 1.2e-06 57.8 148 37.2
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 1.2e-06 57.8 93 43.0
FAN26G2532 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.2e-06 57.8 89 50.6
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 1.2e-06 57.8 92 44.6
unitig_747.g21502 Utricularia gibba HOM05D004728 ORTHO05D002375 1.2e-06 57.8 89 53.9
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 1.6e-06 57.4 68 64.7
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 1.6e-06 57.4 93 31.2
ECA232G3092 Erigeron canadensis HOM05D004728 ORTHO05D045252 2.1e-06 57.0 116 37.9
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 2.1e-06 57.0 108 28.7
Lj4A728T44 Lonicera japonica HOM05D004728 ORTHO05D002375 2.7e-06 56.6 142 42.3
Gohir.D05G225700 Gossypium hirsutum HOM05D004728 ORTHO05D002375 3.5e-06 56.2 85 57.6
MSTRG.25340 Avicennia marina HOM05D004728 ORTHO05D002375 4.6e-06 55.8 164 37.8
DCAR_012878 Daucus carota HOM05D004728 ORTHO05D002375 4.6e-06 55.8 95 46.3
ECA232G1403 Erigeron canadensis HOM05D000469 ORTHO05D000131 6.0e-06 55.5 101 48.5
Oeu045992.1 Olea europaea HOM05D004728 ORTHO05D002375 6.0e-06 55.5 168 41.7
Prupe.6G194100 Prunus persica HOM05D004728 ORTHO05D002375 6.0e-06 55.5 131 41.2
MSTRG.1471 Avicennia marina HOM05D004728 ORTHO05D002375 7.9e-06 55.1 90 54.4
MSTRG.3754 Avicennia marina HOM05D004728 ORTHO05D002375 7.9e-06 55.1 94 43.6
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 7.9e-06 55.1 136 25.0


User provided reference genes

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