Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.2e-94 349.7 166 100.0
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 2.3e-82 308.9 166 86.1
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 1.5e-81 306.2 166 84.9
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 4.4e-81 304.7 166 84.3
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 4.1e-79 298.1 166 81.9
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 2.7e-78 295.4 166 77.1
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 6.0e-78 294.3 166 77.7
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.0e-77 293.5 166 76.5
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.0e-77 293.5 166 75.9
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.7e-77 292.7 166 77.1
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 3.0e-77 292.0 166 76.5
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 3.0e-77 292.0 166 79.5
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 6.6e-77 290.8 166 75.9
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 1.5e-76 289.7 166 75.9
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 1.9e-76 289.3 166 76.5
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 9.5e-76 287.0 166 76.5
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 9.5e-76 287.0 166 76.5
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 4.7e-75 284.6 166 78.9
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 4.7e-75 284.6 166 78.9
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 6.2e-75 284.3 166 75.9
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 1.1e-74 283.5 166 74.7
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 2.3e-74 282.3 166 74.1
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.3e-74 282.3 166 76.5
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 5.2e-74 281.2 166 76.5
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 6.8e-74 280.8 166 75.3
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 3.4e-73 278.5 166 74.1
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 5.8e-73 277.7 166 74.1
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.8e-73 276.9 166 74.7
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.8e-73 276.9 166 74.7
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 9.8e-73 276.9 166 74.7
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.3e-72 276.6 166 74.7
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.7e-72 276.2 164 75.0
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 2.2e-72 275.8 166 74.7
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.2e-72 275.8 166 74.7
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 3.7e-72 275.0 166 74.1
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 8.3e-72 273.9 166 73.5
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 1.1e-71 273.5 166 73.5
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 1.1e-71 273.5 164 72.6
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 1.4e-71 273.1 166 74.7
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 7.0e-71 270.8 166 72.3
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 7.0e-71 270.8 166 73.5
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 9.2e-71 270.4 164 73.2
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.6e-70 269.6 166 72.9
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 2.7e-70 268.9 166 72.9
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.6e-70 268.1 166 71.7
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 7.8e-70 267.3 166 72.3
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 7.8e-70 267.3 173 70.5
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 1.7e-69 266.2 166 69.9
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.3e-69 265.8 166 71.7
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 71.3
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 71.3
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 3.9e-69 265.0 167 71.3
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 6.6e-69 264.2 166 71.1
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 8.6e-69 263.8 167 70.7
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 8.6e-69 263.8 167 71.3
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 8.6e-69 263.8 167 71.3
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 8.6e-69 263.8 167 71.9
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.5e-68 263.1 167 71.3
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 1.9e-68 262.7 188 66.5
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.9e-68 262.7 166 69.3
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 71.3
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 4.3e-68 261.5 166 71.7
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 9.5e-68 260.4 167 70.1
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 9.5e-68 260.4 167 70.1
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 2.1e-67 259.2 167 70.1
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 2.8e-67 258.8 166 71.7
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 2.8e-67 258.8 167 70.1
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 2.8e-67 258.8 166 71.7
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 3.6e-67 258.5 165 70.3
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 4.7e-67 258.1 166 72.9
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.1e-66 256.9 166 71.1
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 1.1e-66 256.9 166 67.5
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 2.3e-66 255.8 177 67.2
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.3e-66 255.8 165 70.9
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 3.1e-66 255.4 166 67.5
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 4.0e-66 255.0 166 67.5
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 1.5e-65 253.1 164 69.5
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.0e-65 252.7 166 68.7
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.0e-65 252.7 166 69.9
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 2.0e-65 252.7 166 69.9
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.4e-65 251.5 166 67.5
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.8e-65 251.1 166 66.9
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 7.5e-65 250.8 166 66.9
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.3e-64 250.0 167 68.9
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.7e-64 249.6 166 65.7
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.7e-64 249.6 218 56.0
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.2e-64 249.2 166 68.1
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 6.4e-64 247.7 166 65.1
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.4e-63 245.7 168 66.1
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 7.1e-63 244.2 202 56.9
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 7.1e-63 244.2 166 65.1
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.2e-62 243.4 179 63.1
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.0e-61 240.4 159 67.3
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.7e-61 239.6 166 63.9
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 4.3e-60 235.0 188 59.6
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 5.6e-60 234.6 167 66.5
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 4.7e-59 231.5 166 65.7
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.4e-58 229.9 166 62.0
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 1.8e-58 229.6 136 75.0
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 2.0e-57 226.1 165 63.0
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 9.9e-57 223.8 166 63.3
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 1.3e-56 223.4 165 64.8
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 8.4e-56 220.7 189 54.0
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 3.2e-55 218.8 167 58.7
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 7.1e-55 217.6 166 63.3
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-51 206.8 175 55.4
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 2.1e-51 206.1 127 69.3
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 4.8e-51 204.9 166 56.6
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 6.2e-51 204.5 126 72.2
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.4e-50 203.4 131 69.5
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 3.4e-49 198.7 136 65.4
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.4e-49 198.7 166 57.8
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 9.3e-47 190.7 166 52.4
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.2e-46 190.3 176 49.4
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 3.5e-46 188.7 166 53.6
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 3.5e-46 188.7 166 56.0
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.9e-45 185.3 116 70.7
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.3e-43 180.3 165 52.7
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.3e-43 180.3 164 51.8
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 3.6e-43 178.7 177 52.5
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.8e-42 176.4 128 63.3
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 2.0e-41 172.9 166 53.0
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.7e-40 169.9 166 51.2
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 2.4e-39 166.0 96 74.0
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 2.4e-39 166.0 96 74.0
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.6e-38 163.3 131 61.8
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.7e-38 162.5 140 52.1
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.9e-38 161.0 133 54.1
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 2.3e-37 159.5 163 48.5
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.0e-37 159.1 117 63.2
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.4e-36 154.5 146 49.3
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 9.6e-36 154.1 97 70.1
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.6e-36 154.1 150 50.0
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-34 150.2 137 48.9
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 6.5e-32 141.4 97 69.1
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.4e-31 140.2 127 50.4
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 2.1e-30 136.3 182 45.1
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.2e-25 120.6 80 65.0
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 4.5e-25 118.6 101 57.4
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.9e-23 113.2 165 38.8
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.6e-22 110.2 165 38.2
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.5e-22 109.0 126 40.5
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 6.1e-22 108.2 112 47.3
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 1.3e-19 100.5 86 57.0
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 4.8e-19 98.6 89 50.6
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.6e-14 82.0 67 55.2
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.0e-13 80.9 167 29.9
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.0e-13 79.3 64 56.2
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.0e-13 79.3 64 56.2
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.7e-13 78.2 59 57.6
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.7e-12 74.3 64 54.7
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.3e-11 73.9 59 55.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.2e-11 73.2 64 53.1
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.8e-11 72.0 119 32.8
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.4e-10 70.5 61 49.2
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 2.6e-09 66.2 40 62.5
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 5.9e-09 65.1 168 30.4
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 1.3e-08 63.9 39 76.9
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 2.9e-08 62.8 127 31.5
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 6.5e-08 61.6 39 74.4
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 4.2e-07 58.9 43 58.1
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 5.5e-07 58.5 83 36.1


User provided reference genes

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