Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 0.0e+00 1124.4 580 100.0
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 6.1e-287 990.3 580 86.6
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.8e-284 981.5 613 82.9
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.1e-272 943.0 540 87.8
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 8.0e-271 936.8 576 82.1
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 5.7e-269 930.6 584 81.3
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.3e-268 929.5 581 81.6
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.2e-268 928.7 583 81.3
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 4.8e-268 927.5 569 82.8
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 9.1e-267 923.3 588 80.8
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.6e-266 922.5 568 82.7
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 5.9e-266 920.6 582 80.8
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 5.0e-265 917.5 570 82.1
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.0e-262 909.8 559 82.1
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.0e-262 909.8 571 80.9
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.8e-262 909.1 559 81.9
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.2e-261 906.4 579 80.0
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 3.4e-261 904.8 579 80.3
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 7.5e-261 903.7 600 78.5
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 9.8e-261 903.3 581 79.2
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.8e-260 901.7 604 77.8
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 3.1e-259 898.3 577 79.0
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 9.2e-259 896.7 559 81.2
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.2e-258 896.3 549 81.8
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.6e-258 896.0 579 78.2
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 5.9e-258 894.0 579 78.8
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.3e-257 892.9 581 78.5
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.7e-257 892.5 564 80.3
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 5.0e-257 891.0 538 82.9
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 8.6e-257 890.2 581 79.2
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.1e-256 889.8 583 79.1
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.1e-256 889.8 580 78.4
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.9e-256 889.0 577 79.2
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.5e-256 888.6 576 78.3
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 9.5e-256 886.7 512 85.5
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 3.6e-255 884.8 600 77.0
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 3.6e-255 884.8 556 80.8
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.1e-255 884.0 578 79.1
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 4.0e-254 881.3 605 76.4
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 5.2e-254 880.9 566 78.3
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 5.2e-254 880.9 534 82.8
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 6.8e-254 880.6 585 77.1
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 8.9e-254 880.2 553 80.3
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.5e-253 879.4 569 78.9
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.6e-253 878.6 533 82.7
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 4.4e-253 877.9 556 79.3
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 4.4e-253 877.9 560 78.9
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 3.7e-252 874.8 565 79.6
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 3.7e-252 874.8 580 76.4
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 6.4e-252 874.0 550 80.5
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 8.3e-252 873.6 548 81.8
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.4e-251 872.8 515 84.3
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 4.1e-251 871.3 543 80.8
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 4.1e-251 871.3 582 76.5
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 9.2e-251 870.2 580 77.9
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.2e-251 870.2 614 74.9
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 2.0e-250 869.0 576 76.0
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.5e-250 868.2 614 74.9
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 7.8e-250 867.1 548 78.5
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.7e-249 865.9 575 76.3
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.3e-249 865.5 583 75.8
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.3e-249 865.5 536 81.5
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.5e-248 862.8 552 78.1
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 2.5e-248 862.1 544 79.8
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 7.3e-248 860.5 579 75.3
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 7.3e-248 860.5 558 78.1
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.1e-247 859.0 564 78.0
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 4.7e-247 857.8 570 76.8
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 8.0e-247 857.1 559 76.7
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.1e-246 856.7 561 77.4
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.1e-246 856.7 576 76.2
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.1e-246 856.7 561 77.4
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.1e-246 856.7 561 77.4
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.1e-246 856.7 576 76.2
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.4e-246 856.3 568 76.4
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 3.1e-246 855.1 572 76.7
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 3.1e-246 855.1 582 74.9
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 4.0e-246 854.7 578 75.3
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 5.2e-246 854.4 568 75.9
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 3.4e-245 851.7 572 76.2
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 4.4e-245 851.3 575 76.0
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 4.9e-244 847.8 544 77.9
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 2.4e-243 845.5 543 78.3
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.6e-242 842.8 544 78.3
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 7.8e-242 840.5 526 79.7
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.0e-241 838.6 597 73.2
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.1e-241 837.8 551 75.7
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.1e-240 836.6 576 74.1
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.9e-240 835.9 580 74.5
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.2e-239 833.2 551 76.4
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 2.0e-237 825.9 528 78.6
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.0e-237 825.9 564 75.4
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 5.8e-237 824.3 568 74.3
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 7.5e-237 823.9 544 76.8
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 4.9e-236 821.2 488 82.6
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 6.4e-236 820.8 582 71.8
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.3e-233 813.1 577 72.3
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 6.6e-233 810.8 518 78.0
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 1.6e-231 806.2 563 74.2
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.8e-228 795.0 484 81.8
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 2.1e-226 789.3 561 71.3
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 3.0e-225 785.4 483 81.6
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.1e-224 783.5 559 71.4
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 9.6e-224 780.4 478 82.0
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.6e-223 779.6 547 74.2
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.6e-218 763.1 451 81.8
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 3.5e-218 761.9 574 67.8
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.7e-217 759.6 450 82.2
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 8.1e-215 750.7 528 71.0
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 6.9e-214 747.7 523 71.1
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 6.4e-212 741.1 523 70.6
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.7e-210 735.7 541 70.6
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 3.7e-199 698.7 399 87.2
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.1e-195 687.2 559 65.3
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.3e-193 679.5 515 66.6
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.4e-190 669.5 586 63.0
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 5.0e-188 661.8 575 62.4
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.1e-187 660.6 496 65.7
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 5.3e-182 641.7 568 57.6
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 9.4e-179 630.9 450 69.8
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 4.7e-178 628.6 507 62.9
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.5e-173 612.1 537 62.9
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 1.8e-169 600.1 502 63.5
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 2.0e-165 586.6 318 90.3
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 7.0e-158 561.6 410 67.3
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.6e-157 560.5 558 56.3
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.9e-156 556.2 499 59.3
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 2.6e-152 543.1 496 58.7
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.4e-152 542.3 495 58.4
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.7e-152 542.0 496 58.5
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.3e-145 520.0 358 76.8
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.1e-137 493.0 331 72.2
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.2e-127 460.3 493 51.9
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 3.2e-118 429.9 486 46.9
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 6.4e-111 405.6 598 44.8
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 4.9e-103 379.4 531 39.7
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.6e-93 346.3 428 48.1
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.8e-90 337.0 365 53.2
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 3.0e-84 317.0 422 41.2
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 7.7e-72 275.8 185 69.2
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.8e-66 256.5 563 35.7
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.8e-58 229.9 175 71.4
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.8e-55 220.3 256 48.8
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.7e-51 206.5 504 33.3
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.5e-46 191.0 105 88.6
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.6e-43 181.0 416 33.7
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.2e-40 172.2 122 71.3
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.6e-40 171.8 138 59.4
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.7e-39 168.3 106 83.0
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.9e-30 138.3 80 81.2
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 3.7e-26 124.0 126 58.7
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 5.0e-23 113.6 128 43.0
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 7.3e-22 109.8 65 83.1
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-19 102.1 71 73.2
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.9e-18 97.1 97 59.8
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 7.0e-17 93.2 71 67.6
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 6.0e-16 90.1 102 54.9
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.2e-11 75.9 53 69.8
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-11 75.5 54 72.2
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 2.6e-11 74.7 111 48.6
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 1.3e-10 72.4 134 38.8
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 2.9e-10 71.2 43 76.7
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 7.1e-09 66.6 98 43.9
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 3.5e-08 64.3 77 51.9
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.7e-07 62.0 57 52.6
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 1.7e-07 62.0 52 57.7
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.0e-07 61.2 53 60.4
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 5.1e-07 60.5 46 56.5
QL02p056495 Quercus lobata HOM05D001920 ORTHO05D005408 1.5e-06 58.9 32 93.8
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 1.9e-06 58.5 50 56.0


User provided reference genes

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