Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p055646 Quercus lobata HOM05D064149 ORTHO05D024744 3.2e-89 331.6 158 100.0
QL02p007736 Quercus lobata HOM05D064149 ORTHO05D024744 3.0e-79 298.5 145 98.6
QL03p004138 Quercus lobata HOM05D000556 ORTHO05D024744 1.6e-40 169.9 118 77.1
QL03p004142 Quercus lobata HOM05D000556 ORTHO05D000404 2.0e-14 83.2 81 65.4
Haze_17631 Corylus avellana HOM05D003844 ORTHO05D004534 2.4e-12 76.3 36 91.7
Cfa018432 Carpinus fangiana HOM05D003844 ORTHO05D004534 3.2e-12 75.9 36 91.7
CSS0015572 Camellia sinensis var. sinensis HOM05D003844 ORTHO05D004534 2.1e-11 73.2 36 88.9
Dinv36050 Davidia involucrata HOM05D003844 ORTHO05D004534 2.1e-11 73.2 36 88.9
Duzib093G0973 Durio zibethinus HOM05D003844 ORTHO05D004534 2.1e-11 73.2 36 88.9
Atru.chr13.530 Acer truncatum HOM05D003844 ORTHO05D004534 3.5e-11 72.4 36 86.1
Gohir.A06G011600 Gossypium hirsutum HOM05D003844 ORTHO05D004534 3.5e-11 72.4 36 88.9
Gohir.D06G009000 Gossypium hirsutum HOM05D003844 ORTHO05D004534 3.5e-11 72.4 36 88.9
Gorai.010G011800 Gossypium raimondii HOM05D003844 ORTHO05D004534 3.5e-11 72.4 36 88.9
COL.COLO4_26357 Corchorus olitorius HOM05D003844 ORTHO05D004534 4.6e-11 72.0 36 86.1
Cpa.g.c28380.3 Carica papaya HOM05D003844 ORTHO05D004534 6.0e-11 71.6 45 73.3
Hma1.2p1_0203F.1_g086610 Hydrangea macrophylla HOM05D003844 ORTHO05D004534 6.0e-11 71.6 36 88.9
Lj1g0003038 Lotus japonicus HOM05D003844 ORTHO05D004534 7.8e-11 71.2 36 86.1
Psat3g033360 Pisum sativum HOM05D003844 ORTHO05D004534 7.8e-11 71.2 36 86.1
TPR.G19519 Trifolium pratense HOM05D003844 ORTHO05D004534 1.0e-10 70.9 36 86.1
Ca_09005_v3 Cicer arietinum L. HOM05D003844 ORTHO05D004534 1.3e-10 70.5 45 71.1
CAN.G1126.25 Capsicum annuum HOM05D003844 ORTHO05D004534 1.7e-10 70.1 36 83.3
Lalb_Chr23g0266661 Lupinus albus HOM05D003844 ORTHO05D004534 1.7e-10 70.1 36 80.6
MSTRG.22297 Avicennia marina HOM05D003844 ORTHO05D004534 2.3e-10 69.7 44 68.2
TAR628G0330 Trochodendron aralioides HOM05D003844 ORTHO05D004534 2.3e-10 69.7 36 83.3
MD08G1032300 Malus domestica HOM05D003844 ORTHO05D004534 3.0e-10 69.3 45 71.1
Os05g0357800 Oryza sativa ssp. japonica HOM05D003844 ORTHO05D004534 3.0e-10 69.3 36 83.3
Sabra14G0030700 Salix brachista HOM05D003844 ORTHO05D004534 3.0e-10 69.3 74 51.4
Sopen04g033610 Solanum pennellii HOM05D003844 ORTHO05D004534 3.0e-10 69.3 36 80.6
PGSC0003DMG400027853 Solanum tuberosum HOM05D003844 ORTHO05D004534 3.0e-10 69.3 36 80.6
Actinidia15306 Actinidia chinensis HOM05D003844 ORTHO05D004534 5.1e-10 68.6 36 83.3
VMungo1309G3156 Vigna mungo HOM05D003844 ORTHO05D004534 5.1e-10 68.6 36 83.3
Lj4A783T77 Lonicera japonica HOM05D003844 ORTHO05D004534 6.6e-10 68.2 36 83.3
Lj4C43T11 Lonicera japonica HOM05D003844 ORTHO05D004534 8.6e-10 67.8 36 80.6
Medtr7g104580 Medicago truncatula HOM05D003844 ORTHO05D004534 8.6e-10 67.8 36 83.3
SalBow8G1589 Salvia bowleyana HOM05D003844 ORTHO05D004534 8.6e-10 67.8 36 80.6
Ciclev10001396m.g Citrus clementina HOM05D003844 ORTHO05D004534 1.1e-09 67.4 34 88.2
Rhsim06G0035800 Rhododendron simsii HOM05D003844 ORTHO05D004534 1.1e-09 67.4 36 80.6
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 1.5e-09 67.0 36 80.6
Nn5g29521 Nelumbo nucifera HOM05D003844 ORTHO05D004534 1.5e-09 67.0 36 77.8
Cc10_g03240 Coffea canephora HOM05D003844 ORTHO05D004534 1.9e-09 66.6 36 77.8
Migut.C00695 Erythranthe guttata HOM05D003844 ORTHO05D004534 1.9e-09 66.6 36 80.6
vmacro21621 Vaccinium macrocarpon HOM05D003844 ORTHO05D004534 3.3e-09 65.9 36 80.6
Ah.11g043250 Amaranthus hybridus HOM05D003844 ORTHO05D004534 5.6e-09 65.1 35 82.9
ClCG08G015280 Citrullus lanatus HOM05D003844 ORTHO05D004534 5.6e-09 65.1 36 77.8
FAN15G3259 Fragaria x ananassa HOM05D003844 ORTHO05D004534 5.6e-09 65.1 36 77.8
FAN20G0087 Fragaria x ananassa HOM05D003844 ORTHO05D004534 5.6e-09 65.1 36 77.8
FAN27G2061 Fragaria x ananassa HOM05D003844 ORTHO05D004534 5.6e-09 65.1 36 77.8
Oeu009862.2 Olea europaea HOM05D003844 ORTHO05D004534 5.6e-09 65.1 36 77.8
Aqoxy6G01030 Aquilegia oxysepala HOM05D003844 ORTHO05D004534 7.3e-09 64.7 45 64.4
FvH4_2g40130 Fragaria vesca HOM05D003844 ORTHO05D004534 7.3e-09 64.7 36 77.8
CSS0001576 Camellia sinensis var. sinensis HOM05D003844 ORTHO05D024744 9.5e-09 64.3 38 78.9
MBI16_g28231_MAGBIO Magnolia biondii HOM05D003844 ORTHO05D004534 9.5e-09 64.3 36 83.3
Eucgr.A00496 Eucalyptus grandis HOM05D003844 ORTHO05D004534 1.6e-08 63.5 36 80.6
Gorai.002G129600 Gossypium raimondii HOM05D003844 ORTHO05D004534 2.8e-08 62.8 36 77.8
GSVIVG01036334001 Vitis vinifera HOM05D003844 ORTHO05D004534 2.8e-08 62.8 34 79.4
Sc02g0006420 Simmondsia chinensis HOM05D003844 ORTHO05D004534 3.6e-08 62.4 36 77.8
DCAR_020963 Daucus carota HOM05D003844 ORTHO05D004534 8.1e-08 61.2 33 84.8
GSVIVG01021559001 Vitis vinifera HOM05D003844 ORTHO05D024744 1.1e-07 60.8 34 76.5
ATR0733G255 Amborella trichopoda HOM05D003844 ORTHO05D004534 1.8e-07 60.1 36 75.0
THA.LOC104813592 Tarenaya hassleriana HOM05D003844 ORTHO05D004534 3.1e-07 59.3 45 57.8
MBI16_g24678_MAGBIO Magnolia biondii HOM05D003844 ORTHO05D004534 2.6e-06 56.2 39 69.2
BcaB02g08710 Brassica carinata HOM05D003844 ORTHO05D004534 4.4e-06 55.5 45 55.6
Lsat_1_v5_gn_1_18240 Lactuca sativa HOM05D003844 ORTHO05D004534 4.4e-06 55.5 36 75.0
Sp5g34790 Schrenkiella parvula HOM05D003844 ORTHO05D004534 9.9e-06 54.3 45 53.3


User provided reference genes

Program Settings